Miyakogusa Predicted Gene

Lj4g3v2214790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2214790.1 Non Chatacterized Hit- tr|D8TRX1|D8TRX1_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,47.42,0.000000000000009,Cpn10,Chaperonin Cpn10; no
description,Chaperonin Cpn10; CHAPERONINS_CPN10,Chaperonin Cpn10,
conserv,CUFF.50462.1
         (240 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G20720.3 | Symbols: CPN20 | chaperonin 20 | chr5:7015015-7016...   354   2e-98
AT5G20720.2 | Symbols: CPN20, CPN10, CHCPN10, ATCPN21, CPN21 | c...   354   2e-98
AT5G20720.1 | Symbols: CPN20, CPN10, CHCPN10, ATCPN21, CPN21 | c...   354   2e-98
AT3G60210.1 | Symbols:  | GroES-like family protein | chr3:22251...    55   5e-08
AT1G14980.1 | Symbols: CPN10 | chaperonin 10 | chr1:5165930-5166...    55   5e-08
AT1G23100.1 | Symbols:  | GroES-like family protein | chr1:81958...    54   8e-08
AT2G44650.1 | Symbols: CHL-CPN10, CPN10 | chloroplast chaperonin...    51   7e-07

>AT5G20720.3 | Symbols: CPN20 | chaperonin 20 | chr5:7015015-7016354
           FORWARD LENGTH=253
          Length = 253

 Score =  354 bits (909), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 181/241 (75%), Positives = 209/241 (86%), Gaps = 5/241 (2%)

Query: 1   MATSQFTAS--SISARNLPSLEGLRPSALQFHHVGRVRIATPTQKWFPSLVVKAATVVAP 58
           MA +Q TAS  ++SAR+L SL+GLR S+++F  +   +  T  Q  F  LVVKAA+VVAP
Sbjct: 1   MAATQLTASPVTMSARSLASLDGLRASSVKFSSL---KPGTLRQSQFRRLVVKAASVVAP 57

Query: 59  KHTAIKPLGDRVLVKIKEAEEKTVGGILLPSTAQSKPQGGEVVAVGEGKSIGNNKVDISV 118
           K+T+IKPLGDRVLVKIKEAEEKT+GGILLPSTAQSKPQGGEVVAVGEG++IG NK+DI+V
Sbjct: 58  KYTSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITV 117

Query: 119 KTGAKVVYSKYAGTEVEFNGSKHLILKDDDIVGILETDEVQDLKPLNDRVLIKVAAAEEK 178
            TGA+++YSKYAGTEVEFN  KHLILK+DDIVGILET++++DLKPLNDRV IKVA AEEK
Sbjct: 118 PTGAQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEK 177

Query: 179 TAGGLLLTEATKEKPSIGTVIAAGPGTLDEEGNRKPLSVTPGSTVLYSKYAGNDFKGKDG 238
           TAGGLLLTE TKEKPSIGTVIA GPG+LDEEG   PL V+ GSTVLYSKYAGNDFKGKDG
Sbjct: 178 TAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDG 237

Query: 239 S 239
           S
Sbjct: 238 S 238


>AT5G20720.2 | Symbols: CPN20, CPN10, CHCPN10, ATCPN21, CPN21 |
           chaperonin 20 | chr5:7015015-7016354 FORWARD LENGTH=253
          Length = 253

 Score =  354 bits (909), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 181/241 (75%), Positives = 209/241 (86%), Gaps = 5/241 (2%)

Query: 1   MATSQFTAS--SISARNLPSLEGLRPSALQFHHVGRVRIATPTQKWFPSLVVKAATVVAP 58
           MA +Q TAS  ++SAR+L SL+GLR S+++F  +   +  T  Q  F  LVVKAA+VVAP
Sbjct: 1   MAATQLTASPVTMSARSLASLDGLRASSVKFSSL---KPGTLRQSQFRRLVVKAASVVAP 57

Query: 59  KHTAIKPLGDRVLVKIKEAEEKTVGGILLPSTAQSKPQGGEVVAVGEGKSIGNNKVDISV 118
           K+T+IKPLGDRVLVKIKEAEEKT+GGILLPSTAQSKPQGGEVVAVGEG++IG NK+DI+V
Sbjct: 58  KYTSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITV 117

Query: 119 KTGAKVVYSKYAGTEVEFNGSKHLILKDDDIVGILETDEVQDLKPLNDRVLIKVAAAEEK 178
            TGA+++YSKYAGTEVEFN  KHLILK+DDIVGILET++++DLKPLNDRV IKVA AEEK
Sbjct: 118 PTGAQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEK 177

Query: 179 TAGGLLLTEATKEKPSIGTVIAAGPGTLDEEGNRKPLSVTPGSTVLYSKYAGNDFKGKDG 238
           TAGGLLLTE TKEKPSIGTVIA GPG+LDEEG   PL V+ GSTVLYSKYAGNDFKGKDG
Sbjct: 178 TAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDG 237

Query: 239 S 239
           S
Sbjct: 238 S 238


>AT5G20720.1 | Symbols: CPN20, CPN10, CHCPN10, ATCPN21, CPN21 |
           chaperonin 20 | chr5:7015015-7016354 FORWARD LENGTH=253
          Length = 253

 Score =  354 bits (909), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 181/241 (75%), Positives = 209/241 (86%), Gaps = 5/241 (2%)

Query: 1   MATSQFTAS--SISARNLPSLEGLRPSALQFHHVGRVRIATPTQKWFPSLVVKAATVVAP 58
           MA +Q TAS  ++SAR+L SL+GLR S+++F  +   +  T  Q  F  LVVKAA+VVAP
Sbjct: 1   MAATQLTASPVTMSARSLASLDGLRASSVKFSSL---KPGTLRQSQFRRLVVKAASVVAP 57

Query: 59  KHTAIKPLGDRVLVKIKEAEEKTVGGILLPSTAQSKPQGGEVVAVGEGKSIGNNKVDISV 118
           K+T+IKPLGDRVLVKIKEAEEKT+GGILLPSTAQSKPQGGEVVAVGEG++IG NK+DI+V
Sbjct: 58  KYTSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITV 117

Query: 119 KTGAKVVYSKYAGTEVEFNGSKHLILKDDDIVGILETDEVQDLKPLNDRVLIKVAAAEEK 178
            TGA+++YSKYAGTEVEFN  KHLILK+DDIVGILET++++DLKPLNDRV IKVA AEEK
Sbjct: 118 PTGAQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEK 177

Query: 179 TAGGLLLTEATKEKPSIGTVIAAGPGTLDEEGNRKPLSVTPGSTVLYSKYAGNDFKGKDG 238
           TAGGLLLTE TKEKPSIGTVIA GPG+LDEEG   PL V+ GSTVLYSKYAGNDFKGKDG
Sbjct: 178 TAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDG 237

Query: 239 S 239
           S
Sbjct: 238 S 238


>AT3G60210.1 | Symbols:  | GroES-like family protein |
           chr3:22251443-22252709 REVERSE LENGTH=138
          Length = 138

 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 26/123 (21%)

Query: 36  RIATPTQKWFPSLVVKAATVVAPKHTAIKPLGDRVLVKIKEAEEKTVGGILLPSTA--QS 93
           RI   + KW P+ VV              P  DRVLV+++   EK+ GG+LLP +A    
Sbjct: 38  RINAVSTKWEPAKVV--------------PQADRVLVRLEVLPEKSSGGVLLPKSAVKFE 83

Query: 94  KPQGGEVVAVGEGKSIGNNKVDISVKTGAKVVYSKYAGTEVEF--NGSKHLILKDDDIVG 151
           +   GEVV+V  G  +G       V+ G KV++S  +  EV+F    +KH   K+ D++ 
Sbjct: 84  RYLTGEVVSV--GSEVGE------VEPGKKVLFSDMSAYEVDFGTEDAKHCFCKESDLLA 135

Query: 152 ILE 154
           I++
Sbjct: 136 IVQ 138


>AT1G14980.1 | Symbols: CPN10 | chaperonin 10 | chr1:5165930-5166654
           REVERSE LENGTH=98
          Length = 98

 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 2/93 (2%)

Query: 65  PLGDRVLVKIKEAEEKTVGGILLPSTAQSKPQGGEVVAVGEGKSIGNNK-VDISVKTGAK 123
           P  +R+LV+      KT  GILLP  + SK   G+V+AVG G    + K + +SVK G  
Sbjct: 7   PTFNRILVQRVIQPAKTESGILLPEKS-SKLNSGKVIAVGPGSRDKDGKLIPVSVKEGDT 65

Query: 124 VVYSKYAGTEVEFNGSKHLILKDDDIVGILETD 156
           V+  +Y GT+V+   +++ + +D+D++G L  D
Sbjct: 66  VLLPEYGGTQVKLGENEYHLFRDEDVLGTLHED 98



 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 158 VQDLKPLNDRVLIKVAAAEEKTAGGLLLTEATKEKPSIGTVIAAGPGTLDEEGNRKPLSV 217
           ++ L P  +R+L++      KT  G+LL E + +  S G VIA GPG+ D++G   P+SV
Sbjct: 2   MKRLIPTFNRILVQRVIQPAKTESGILLPEKSSKLNS-GKVIAVGPGSRDKDGKLIPVSV 60

Query: 218 TPGSTVLYSKYAGNDFK 234
             G TVL  +Y G   K
Sbjct: 61  KEGDTVLLPEYGGTQVK 77


>AT1G23100.1 | Symbols:  | GroES-like family protein |
           chr1:8195867-8196336 FORWARD LENGTH=97
          Length = 97

 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 2/90 (2%)

Query: 65  PLGDRVLVKIKEAEEKTVGGILLPSTAQSKPQGGEVVAVGEG-KSIGNNKVDISVKTGAK 123
           P  +RVLV+      KTV GILLP  + S+   G V+AVG G +    N + +SVK G  
Sbjct: 7   PTLNRVLVEKILPPSKTVSGILLPEKS-SQLNSGRVIAVGPGARDRAGNLIPVSVKEGDN 65

Query: 124 VVYSKYAGTEVEFNGSKHLILKDDDIVGIL 153
           V+  ++ GT+V+    + L+ +D+DI+  L
Sbjct: 66  VLLPEFGGTQVKLGEKEFLLYRDEDIMATL 95



 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 161 LKPLNDRVLIKVAAAEEKTAGGLLLTEATKEKPSIGTVIAAGPGTLDEEGNRKPLSVTPG 220
           L P  +RVL++      KT  G+LL E + +  S G VIA GPG  D  GN  P+SV  G
Sbjct: 5   LIPTLNRVLVEKILPPSKTVSGILLPEKSSQLNS-GRVIAVGPGARDRAGNLIPVSVKEG 63

Query: 221 STVLYSKYAGNDFK 234
             VL  ++ G   K
Sbjct: 64  DNVLLPEFGGTQVK 77


>AT2G44650.1 | Symbols: CHL-CPN10, CPN10 | chloroplast chaperonin 10
           | chr2:18419521-18420510 REVERSE LENGTH=139
          Length = 139

 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 24/125 (19%)

Query: 33  GRVRIATPTQKWFPSLVVKAATVVAPKHTAIKPLGDRVLVKIKEAEEKTVGGILLPSTA- 91
           G +RI   + KW P+ VV              P  DRVLV++++   K+ GG+LLP  A 
Sbjct: 36  GCLRIKAISTKWEPTKVV--------------PQADRVLVRLEDLPIKSSGGVLLPKAAV 81

Query: 92  -QSKPQGGEVVAVGEGKSIGNNKVDISVKTGAKVVYSKYAGTEVEF-NGSKHLILKDDDI 149
              +   GE+++VG       ++V   V  G +V++S  +  EV+    ++H   K+ D+
Sbjct: 82  KFERYLTGEIISVG-------SEVGQQVGPGKRVLFSDVSAYEVDLGTDARHCFCKESDL 134

Query: 150 VGILE 154
           + ++E
Sbjct: 135 LALVE 139