Miyakogusa Predicted Gene

Lj4g3v2203570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2203570.1 Non Chatacterized Hit- tr|B9RRA7|B9RRA7_RICCO
Putative uncharacterized protein OS=Ricinus communis G,43.89,8e-19,
,CUFF.50459.1
         (240 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G43850.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    73   2e-13
AT5G21940.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    69   2e-12
AT5G56550.1 | Symbols: OXS3, ATOXS3 | oxidative stress 3 | chr5:...    52   5e-07
AT2G24550.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    50   2e-06
AT5G24890.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    48   5e-06

>AT3G43850.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: vacuole; BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT5G21940.1); Has 215 Blast hits to 215 proteins
           in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes -
           2 (source: NCBI BLink). | chr3:15702085-15704152 REVERSE
           LENGTH=270
          Length = 270

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 60/87 (68%), Gaps = 10/87 (11%)

Query: 64  QSTFKSPLDTMNDLEEELPLKKGISKFYNGKSKSYTSLADAAAVTSVQQMAKPEDPYAKK 123
           +S++  PLD M  LEE LP+K+ ISKFY GKSKS+ SL++ +++  V+ + KPE+ Y+++
Sbjct: 45  ESSYNGPLDMMESLEEALPIKRAISKFYKGKSKSFMSLSETSSL-PVKDLTKPENLYSRR 103

Query: 124 RKDLLARNMLIARSRSCAYNLGGISKR 150
           R++LL+        R C+   GGISK+
Sbjct: 104 RRNLLSH-------RICSR--GGISKK 121


>AT5G21940.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:7249446-7250353 REVERSE LENGTH=264
          Length = 264

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 61/92 (66%), Gaps = 8/92 (8%)

Query: 64  QSTFKSPLDTMNDLEEELPLKKGISKFYNGKSKSYTSLA-----DAAAVTSVQQMAKPED 118
           +S +K PL+ M  LE+ LP++KGISK+Y+GKSKS+T+L         + +S++ +AKPE+
Sbjct: 68  ESPYKGPLEMMESLEQVLPVRKGISKYYSGKSKSFTNLTAEAASALTSSSSMKDLAKPEN 127

Query: 119 PYAKKRKDLLARNMLIARSRSCAYNLGGISKR 150
           PY+++R++LL   +      +     GGISK+
Sbjct: 128 PYSRRRRNLLCHQIW---ENNKTTPRGGISKK 156


>AT5G56550.1 | Symbols: OXS3, ATOXS3 | oxidative stress 3 |
           chr5:22895847-22896502 REVERSE LENGTH=172
          Length = 172

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 36/56 (64%)

Query: 70  PLDTMNDLEEELPLKKGISKFYNGKSKSYTSLADAAAVTSVQQMAKPEDPYAKKRK 125
           PL+ ++DL   LP+K+G+SKFY GKS+S+TSL +  ++  + +       Y  KRK
Sbjct: 74  PLEDLSDLMSHLPIKRGLSKFYEGKSQSFTSLGNVKSLEDLMKRGFKSRNYGAKRK 129


>AT2G24550.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G31510.1); Has 219 Blast hits to 219 proteins
           in 33 species: Archae - 0; Bacteria - 0; Metazoa - 16;
           Fungi - 2; Plants - 184; Viruses - 0; Other Eukaryotes -
           17 (source: NCBI BLink). | chr2:10428060-10429051
           REVERSE LENGTH=245
          Length = 245

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 49/75 (65%), Gaps = 4/75 (5%)

Query: 68  KSPLDTMND-LEEELPLKKGISKFYNGKSKSYTSLADAAAVTSVQQMAKPEDPYAKKRKD 126
           +  LD+ +  LE+ LP+K+G+S  Y GKSKS+ +L +AA  +  + + K E+P+ K+R+ 
Sbjct: 91  RGTLDSFSSSLEDSLPIKRGLSNHYVGKSKSFGNLMEAA--SKAKDLEKVENPFNKRRRL 148

Query: 127 LLARNMLIARSRSCA 141
           ++A N L  R RS +
Sbjct: 149 VIA-NKLRRRGRSMS 162


>AT5G24890.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 13 growth stages; BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT2G24550.1); Has 1807 Blast hits to 1807 proteins
           in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:8558357-8559172
           REVERSE LENGTH=240
          Length = 240

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 39/55 (70%), Gaps = 3/55 (5%)

Query: 71  LDTMNDLEEELPLKKGISKFYNGKSKSYTSLADAAAVTSVQQMAKPEDPYAKKRK 125
           L +M+ LE+ LP K+G+S  Y GKSKS+ +L +   + SV+++AK E+P  K+R+
Sbjct: 95  LASMSSLEDSLPSKRGLSNHYKGKSKSFGNLGE---IGSVKEVAKQENPLNKRRR 146