Miyakogusa Predicted Gene
- Lj4g3v2191490.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2191490.1 Non Chatacterized Hit- tr|C6TAS3|C6TAS3_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2
S,49.15,7e-18,RNI-like,NULL; GB DEF: HYPOTHETICAL PROTEIN
AT2G06040,NULL; F-BOX/LEUCINE RICH REPEAT PROTEIN,NULL;
,gene.Ljchr4_pseudomol_20120830.path1.gene6060.1
(218 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G06040.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Leucine-ri... 177 4e-45
AT5G21900.1 | Symbols: | RNI-like superfamily protein | chr5:72... 124 4e-29
AT5G23340.1 | Symbols: | RNI-like superfamily protein | chr5:78... 60 1e-09
AT1G21410.1 | Symbols: SKP2A | F-box/RNI-like superfamily protei... 59 2e-09
AT1G77000.2 | Symbols: SKP2B | RNI-like superfamily protein | ch... 58 6e-09
AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily pr... 58 6e-09
AT3G58530.1 | Symbols: | RNI-like superfamily protein | chr3:21... 47 1e-05
>AT2G06040.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Leucine-rich
repeat, cysteine-containing subtype
(InterPro:IPR006553); BEST Arabidopsis thaliana protein
match is: RNI-like superfamily protein
(TAIR:AT5G21900.1); Has 5028 Blast hits to 2547 proteins
in 240 species: Archae - 0; Bacteria - 125; Metazoa -
2326; Fungi - 765; Plants - 1373; Viruses - 0; Other
Eukaryotes - 439 (source: NCBI BLink). |
chr2:2352333-2355419 REVERSE LENGTH=762
Length = 762
Score = 177 bits (450), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 122/198 (61%), Gaps = 37/198 (18%)
Query: 2 NRNLTNASVQAIAEQCPGLQALDLTNLCKLTDLSIEYLTNSCQELRTLKLGRNPFRCLSS 61
+R L+++S++ I+E CP L LDL N+CKLTD S+ YL N CQ L L RNPF
Sbjct: 599 SRKLSDSSIKVISENCPNLSVLDLANVCKLTDSSLGYLANGCQALEKLIFCRNPF----- 653
Query: 62 ITLLFARDDDMLLCSLQEMMTYLWEFLGFLTGCDEAIASFLEIIGGSLEELSLNNIKKVG 121
DEA+A+F+E GGSL+ELSLNN+KKVG
Sbjct: 654 --------------------------------SDEAVAAFVETAGGSLKELSLNNVKKVG 681
Query: 122 QHTAVSLAWHARNLHTLDLSWCRNVSDEELGLIVDSCFSLKLLKLFGCSQVTSIFLNGYS 181
+TA++LA H+ L LD+SWCR +S++ LG IVD+ SLK+LK+FGCSQVT +F+ G+S
Sbjct: 682 HNTALALAKHSDKLQILDISWCREMSNDLLGYIVDNSSSLKVLKVFGCSQVTDVFVKGHS 741
Query: 182 NPKIQIIGVKLTLLFQHI 199
NP ++I+GVK+ H+
Sbjct: 742 NPNVKILGVKMDPFLGHL 759
>AT5G21900.1 | Symbols: | RNI-like superfamily protein |
chr5:7238239-7240338 FORWARD LENGTH=544
Length = 544
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 106/204 (51%), Gaps = 37/204 (18%)
Query: 5 LTNASVQAIAEQCPGLQALDLTNLCKLTDLSIEYLTNSCQELRTLKLGRNPFRCLSSITL 64
+T+ + I C L+ALD+T+L KLTD S+E++T C+ L++LKL N F
Sbjct: 375 VTDECMWHIGRYCKKLEALDITDLDKLTDKSLEFITEGCRYLKSLKLTSNRF-------- 426
Query: 65 LFARDDDMLLCSLQEMMTYLWEFLGFLTGCDEAIASFLEIIGGSLEELSLNNIKKVGQHT 124
DE IA+FLE+ GGSL EL LN ++ VG T
Sbjct: 427 -----------------------------SDECIAAFLEVSGGSLRELCLNKVRDVGPET 457
Query: 125 AVSLAWHARNLHTLDLSWCRNVSDEELGLIVDSCFSLKLLKLFGCSQVTSIFLNGYSNPK 184
A SLA + L LDLSWCR + +++L I+ C SL+ LKLFG +QV +L S
Sbjct: 458 AFSLAKVCKMLQFLDLSWCRRLKEDDLRRILRCCSSLQSLKLFGWTQVEDTYLEELSRSD 517
Query: 185 IQIIGVKLTLLFQHIEVLERPQGA 208
+ I G+KLT L+ H++ GA
Sbjct: 518 VHITGLKLTSLYAHLDNFYPSVGA 541
>AT5G23340.1 | Symbols: | RNI-like superfamily protein |
chr5:7856314-7857983 FORWARD LENGTH=405
Length = 405
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 17/188 (9%)
Query: 3 RNLTNASVQAIAEQCPGLQALDLTNLCKLTDLSIEYLTNSCQELRTLKLGRNPFRCLSSI 62
+ +T+ + +I LQ LD++ KL+D + + C +LR L L F S+
Sbjct: 109 KGITDTGLASIGRCLSLLQFLDVSYCRKLSDKGLSAVAEGCHDLRALHLAGCRFITDESL 168
Query: 63 TLLFARDDDMLLCSLQEMMTYLWEFLG-FLTGC---------------DEAIASFLEIIG 106
L R D+ LQ L + GC D ++S +
Sbjct: 169 KSLSERCRDLEALGLQGCTNITDSGLADLVKGCRKIKSLDINKCSNVGDAGVSSVAKACA 228
Query: 107 GSLEELSLNNIKKVGQHTAVSLAWHARNLHTLDLSWCRNVSDEELGLIVDSCF-SLKLLK 165
SL+ L L + KVG + SLA +NL TL + CR++SDE + L+ DSC SLK L+
Sbjct: 229 SSLKTLKLLDCYKVGNESISSLAQFCKNLETLIIGGCRDISDESIMLLADSCKDSLKNLR 288
Query: 166 LFGCSQVT 173
+ C ++
Sbjct: 289 MDWCLNIS 296
>AT1G21410.1 | Symbols: SKP2A | F-box/RNI-like superfamily protein |
chr1:7497479-7499386 FORWARD LENGTH=360
Length = 360
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 22/175 (12%)
Query: 5 LTNASVQAIAEQCPGLQALDLTNLCKLTDLSIEYLTNSCQELRTLKLGRNPFRCLSSITL 64
L + +V+AIA C LQ LDL+ K+TD S+ L + C +L L L ++I
Sbjct: 104 LEDNAVEAIANHCHELQELDLSKSLKITDRSLYALAHGCPDLTKLNLSGCTSFSDTAIAY 163
Query: 65 L--FARDDDMLLCSLQEMMTYLWEFLGFLTGCDEAIA-SFLEIIGGS---LEELSLNNIK 118
L F R +L L GC +A+ + LE IG + ++ L+L +
Sbjct: 164 LTRFCRKLKVL----------------NLCGCVKAVTDNALEAIGNNCNQMQSLNLGWCE 207
Query: 119 KVGQHTAVSLAWHARNLHTLDLSWCRNVSDEELGLIVDSCFSLKLLKLFGCSQVT 173
+ +SLA+ +L TLDL C ++DE + + D C L+ L L+ C +T
Sbjct: 208 NISDDGVMSLAYGCPDLRTLDLCGCVLITDESVVALADWCVHLRSLGLYYCRNIT 262
>AT1G77000.2 | Symbols: SKP2B | RNI-like superfamily protein |
chr1:28940888-28942401 FORWARD LENGTH=360
Length = 360
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 81/174 (46%), Gaps = 20/174 (11%)
Query: 5 LTNASVQAIAEQCPGLQALDLTNLCKLTDLSIEYLTNSCQELRTLKL-GRNPFRCLSSIT 63
L + +V+AIA C LQ LDL+ K+TD S+ L C L L L G F
Sbjct: 104 LEDNAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSF------- 156
Query: 64 LLFARDDDMLLCSLQEMMTYLWEFLGFLTGCDEAIA-SFLEIIG---GSLEELSLNNIKK 119
D L L L + L L GC EA++ + L+ IG L+ L+L +
Sbjct: 157 ------SDTALAHLTRFCRKL-KILN-LCGCVEAVSDNTLQAIGENCNQLQSLNLGWCEN 208
Query: 120 VGQHTAVSLAWHARNLHTLDLSWCRNVSDEELGLIVDSCFSLKLLKLFGCSQVT 173
+ +SLA+ +L TLDL C ++DE + + + C L+ L L+ C +T
Sbjct: 209 ISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALANRCIHLRSLGLYYCRNIT 262
>AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily
protein | chr1:28940888-28942401 FORWARD LENGTH=360
Length = 360
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 81/174 (46%), Gaps = 20/174 (11%)
Query: 5 LTNASVQAIAEQCPGLQALDLTNLCKLTDLSIEYLTNSCQELRTLKL-GRNPFRCLSSIT 63
L + +V+AIA C LQ LDL+ K+TD S+ L C L L L G F
Sbjct: 104 LEDNAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSF------- 156
Query: 64 LLFARDDDMLLCSLQEMMTYLWEFLGFLTGCDEAIA-SFLEIIG---GSLEELSLNNIKK 119
D L L L + L L GC EA++ + L+ IG L+ L+L +
Sbjct: 157 ------SDTALAHLTRFCRKL-KILN-LCGCVEAVSDNTLQAIGENCNQLQSLNLGWCEN 208
Query: 120 VGQHTAVSLAWHARNLHTLDLSWCRNVSDEELGLIVDSCFSLKLLKLFGCSQVT 173
+ +SLA+ +L TLDL C ++DE + + + C L+ L L+ C +T
Sbjct: 209 ISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALANRCIHLRSLGLYYCRNIT 262
>AT3G58530.1 | Symbols: | RNI-like superfamily protein |
chr3:21645759-21648219 FORWARD LENGTH=353
Length = 353
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 37/196 (18%)
Query: 3 RNLTNASVQAIAEQCPGLQALDLTNLCKLTDLSIEYLTNSCQEL-------------RTL 49
+ +++ ++AI CP L+ + ++TD I L +C+ + +++
Sbjct: 122 QKISDNGIEAITSICPKLKVFSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTDKSM 181
Query: 50 KLGRNPFRCLSS--ITLLFARDDDMLLCSLQEMMTY----LWEFLGFLTGCDEAIA---- 99
+L + L S IT DD LL LQ+ + L+ GF I+
Sbjct: 182 QLVAESYPDLESLNITRCVKITDDGLLQVLQKCFSLQTLNLYALSGFTDKAYMKISLLAD 241
Query: 100 -SFLEIIGGSLEELSLNNIKKVG-QHTAVSLAWHARNLHTLDLSWCRNVSDEELGLIVDS 157
FL+I G NI G H A L +L+L+WC ++D + I +S
Sbjct: 242 LRFLDICGA-------QNISDEGIGHIA-----KCNKLESLNLTWCVRITDAGVNTIANS 289
Query: 158 CFSLKLLKLFGCSQVT 173
C SL+ L LFG VT
Sbjct: 290 CTSLEFLSLFGIVGVT 305