Miyakogusa Predicted Gene

Lj4g3v2180380.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2180380.1 Non Chatacterized Hit- tr|Q8S8F0|Q8S8F0_ARATH
Putative uncharacterized protein At2g28020
OS=Arabidop,59.09,0.000000000000003,Med20,Mediator complex, subunit
Med20; SUBFAMILY NOT NAMED,NULL; UBIQUITIN SPECIFIC PROTEASE
HOMOLOG,CUFF.50440.1
         (218 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G28230.1 | Symbols:  | TATA-binding related factor (TRF) of s...   321   2e-88
AT4G09070.1 | Symbols:  | TATA-binding related factor (TRF) of s...   295   2e-80
AT2G28020.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    87   7e-18

>AT2G28230.1 | Symbols:  | TATA-binding related factor (TRF) of
           subunit 20 of Mediator complex | chr2:12037855-12039009
           REVERSE LENGTH=219
          Length = 219

 Score =  321 bits (823), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 144/215 (66%), Positives = 183/215 (85%)

Query: 1   MPIRWILHWQPHQGTVVNSHTLNEISQCVENINGVKDGRWKSTLTFYRPNLRDQSIATDF 60
           MP++W+LHWQP+QG+ V+S  LNE +QCVE+INGVK+GRWK+TL +Y+P L+DQ+   +F
Sbjct: 1   MPVKWVLHWQPNQGSTVSSQILNEATQCVESINGVKEGRWKATLNYYKPMLKDQANQLEF 60

Query: 61  PRDFLGISLMEQPTKYYFIIRGHKIVVEADSSILTIMEKLQSYKSKVALNFEGVQYKLGD 120
           PRDFLGISL +QP KYYFIIR  +IV+EADSSI  IMEKLQSYKSKVAL F+G QY+LGD
Sbjct: 61  PRDFLGISLADQPNKYYFIIRTQRIVLEADSSIQLIMEKLQSYKSKVALYFDGFQYQLGD 120

Query: 121 FQLRVIKVVPNQAENLRGILMEIEYLPISSVEKSRPIMEEFIEIWREVLSKKSLPGHFMR 180
           F+LRV KVVP  +EN+RGI+ME+EYLPISS+EK++ +MEEF+EIW E L+K+SLPG F+ 
Sbjct: 121 FRLRVGKVVPTHSENVRGIVMEVEYLPISSMEKAQKVMEEFLEIWNEALAKRSLPGKFVN 180

Query: 181 AEPNFKEYGLGDTYTPQHTAVQYAAALAQLIASVQ 215
            + NF E+GLGD YTPQHTAV+YA  +A +IA+VQ
Sbjct: 181 IDLNFGEFGLGDIYTPQHTAVRYALVMAHMIATVQ 215


>AT4G09070.1 | Symbols:  | TATA-binding related factor (TRF) of
           subunit 20 of Mediator complex | chr4:5802308-5803392
           FORWARD LENGTH=219
          Length = 219

 Score =  295 bits (754), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 128/215 (59%), Positives = 177/215 (82%)

Query: 1   MPIRWILHWQPHQGTVVNSHTLNEISQCVENINGVKDGRWKSTLTFYRPNLRDQSIATDF 60
           MP++W+LHWQP+QG+  +S  LNE++Q +E++NGVK+G WK+TL +Y+P L+DQ+   +F
Sbjct: 1   MPVKWLLHWQPNQGSTFSSQILNEVTQSIESLNGVKEGTWKATLNYYKPMLQDQANQAEF 60

Query: 61  PRDFLGISLMEQPTKYYFIIRGHKIVVEADSSILTIMEKLQSYKSKVALNFEGVQYKLGD 120
           PR+F+GISL E+P KYYF+IR  +IVVEADSSI  IME LQSYK K++  FEG++Y+LGD
Sbjct: 61  PREFVGISLPEEPDKYYFVIRSQRIVVEADSSIQMIMESLQSYKCKLSFYFEGLEYQLGD 120

Query: 121 FQLRVIKVVPNQAENLRGILMEIEYLPISSVEKSRPIMEEFIEIWREVLSKKSLPGHFMR 180
           F+LRV KVVP  AE +RG++ME+EYLPISS+  ++ +MEEF+EIW+E +SK+SLPG F+ 
Sbjct: 121 FRLRVGKVVPTHAETIRGVVMEVEYLPISSMGMAKKLMEEFLEIWQEAMSKRSLPGKFVN 180

Query: 181 AEPNFKEYGLGDTYTPQHTAVQYAAALAQLIASVQ 215
            E NF+++GLGD YTPQHTAV YA  +A L+A++Q
Sbjct: 181 KELNFEKFGLGDNYTPQHTAVGYAFFMANLMAAIQ 215


>AT2G28020.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: TATA-binding related factor (TRF) of subunit 20 of
           Mediator complex (TAIR:AT2G28230.1); Has 37 Blast hits
           to 37 proteins in 13 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr2:11933728-11933940 FORWARD LENGTH=70
          Length = 70

 Score = 87.4 bits (215), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/66 (59%), Positives = 52/66 (78%), Gaps = 1/66 (1%)

Query: 151 VEKSRPIMEEFIEIWREVLSKKSLPGHFMRAEPNFKEYGLGDTYTPQHTAVQ-YAAALAQ 209
           +E +R +MEEF+EIW E L+K+SLPG F+  + NF E+GLGD YTPQHTAV+ YA  +A 
Sbjct: 1   MEIARKVMEEFLEIWNEALAKRSLPGKFVNKDLNFGEFGLGDNYTPQHTAVRNYALVMAH 60

Query: 210 LIASVQ 215
           +IA+VQ
Sbjct: 61  MIATVQ 66