Miyakogusa Predicted Gene

Lj4g3v2179330.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2179330.1 Non Chatacterized Hit- tr|D8SY77|D8SY77_SELML
Putative uncharacterized protein OS=Selaginella
moelle,27.8,0.00000000009,Stress responsive A/B Barrel Domain,Stress
responsive alpha-beta barrel; seg,NULL; Dimeric alpha+bet,CUFF.50483.1
         (257 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G31670.1 | Symbols:  | Stress responsive alpha-beta barrel do...   232   2e-61
AT1G51360.1 | Symbols: ATDABB1, DABB1 | dimeric A/B barrel domai...   177   6e-45

>AT2G31670.1 | Symbols:  | Stress responsive alpha-beta barrel
           domain protein | chr2:13472699-13473490 REVERSE
           LENGTH=263
          Length = 263

 Score =  232 bits (591), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/247 (51%), Positives = 169/247 (68%), Gaps = 9/247 (3%)

Query: 1   MQCLRLKPPLSFPVTF--SPSKHLRRNH--LPAWS-STRSPIKSMSTTVEHIVLFKVKDD 55
           M C R++P +S P+ F  S +KH R N   LP  S S  S     S  +EHIVLFK KDD
Sbjct: 1   MICARIRPLISSPLAFTISTTKHSRINLRLLPRRSFSVMSSSTPQSQIIEHIVLFKTKDD 60

Query: 56  TDPSKVTAMVNGLSSLISLDHVLHLTVGPILRNRSTSLTFTHMLHSRYNSKEDLDAYSAH 115
            D +K+T+M+N L++L  LD VLH++  P+ R  S++  FTH+LHSRY SKEDL +Y+AH
Sbjct: 61  ADSTKITSMINNLNALAYLDQVLHISTSPLHRI-SSATAFTHVLHSRYESKEDLASYAAH 119

Query: 116 PSHLGVVRGNVLPIIDDLMAVDWVAEDLRGDIVTPQGSAMRLTLLKLKEN-ADSGK--VL 172
           P H+ VV+ +VLPI DD+MAVDW+A+ + G +    GS  +LTLLKLKE+ AD  K  + 
Sbjct: 120 PDHVRVVKESVLPICDDIMAVDWIADRIPGTVAPLPGSVAKLTLLKLKEDVADEAKSEIT 179

Query: 173 GVIREIPESFKQISQLSCGENFSPARAKGFSVASLAVFPGQGELEDVDSNGEVVSYHKDK 232
           GVI+ + E F  I Q++ GENFSPARAKGFS+AS+A F    E+E VD+  E+V+  KDK
Sbjct: 180 GVIKGLSEKFPGIDQITVGENFSPARAKGFSIASIAYFKDLSEMEAVDAQKELVNSQKDK 239

Query: 233 VRDLLES 239
           VRD ++S
Sbjct: 240 VRDYVDS 246


>AT1G51360.1 | Symbols: ATDABB1, DABB1 | dimeric A/B barrel
           domainS-protein 1 | chr1:19044208-19044840 FORWARD
           LENGTH=210
          Length = 210

 Score =  177 bits (449), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 94/201 (46%), Positives = 133/201 (66%), Gaps = 6/201 (2%)

Query: 40  MSTTVEHIVLFKVKDD-TDPSKVTAMVNGLSSLISLDHVLHLTVGPILRNRSTSLT-FTH 97
           MS+ VEH+VLFK+ DD  D  K+ +MVNG++ L++LD VLHL  G I R  +T+ + FTH
Sbjct: 1   MSSIVEHVVLFKLNDDDVDSGKINSMVNGINELVNLDQVLHLYCGSIHRLITTTASDFTH 60

Query: 98  MLHSRYNSKEDLDAYSAHPSHLGVVRGNVLPIIDDLMAVDWVAEDLRGDIVTPQGSAMRL 157
           +LHSRY SKEDL+AY+ HP H+ VV+ +   I +D+MAVDW+AE     +  P GS  ++
Sbjct: 61  VLHSRYRSKEDLNAYAIHPDHVRVVKESE-SIREDIMAVDWIAEQAPEALAPPLGSIGKI 119

Query: 158 TLLKLKENADSGKVLGVIREIPESFKQISQLSCGENFSPARAKGFSVASLAVFPGQGELE 217
           TLLKLKEN      L ++  + E F+ I Q++ GENFSP R+K FS+ S++ F   GE+E
Sbjct: 120 TLLKLKENVMEEAKLEIMEVMKEKFEGIDQITVGENFSPGRSKDFSIGSISYFRDLGEIE 179

Query: 218 DVDSNGEVVSYHKDKVRDLLE 238
            VD     +    DK+RD ++
Sbjct: 180 AVDDQ---MKLQNDKIRDYVD 197