Miyakogusa Predicted Gene
- Lj4g3v2179300.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2179300.1 tr|Q6WG36|Q6WG36_PEA RPA 70kDa subunit OS=Pisum
sativum PE=2 SV=1,78.08,0,rpa1: replication factor-a protein 1
(rpa1),Replication factor-a protein 1 Rpa1; REPLICATION FACTOR
,CUFF.50468.1
(624 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G06510.1 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A | replic... 895 0.0
AT2G06510.2 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A | replic... 862 0.0
AT5G45400.1 | Symbols: RPA70C, ATRPA70C | Replication factor-A p... 611 e-175
AT4G19130.1 | Symbols: | Replication factor-A protein 1-related... 583 e-167
AT5G08020.1 | Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B | ... 303 2e-82
AT5G61000.1 | Symbols: RPA70D, ATRPA70D | Replication factor-A p... 293 3e-79
AT1G52950.1 | Symbols: | Nucleic acid-binding, OB-fold-like pro... 86 8e-17
>AT2G06510.1 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A |
replication protein A 1A | chr2:2585215-2587601 FORWARD
LENGTH=640
Length = 640
Score = 895 bits (2314), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/640 (68%), Positives = 523/640 (81%), Gaps = 19/640 (2%)
Query: 1 MAVNLTANAIPAIVSGDLNLKPLLQVLDIKLISNSKQ--QERYRILLSDAVSSQQAMLAT 58
M V+LT NAI AI GD+NLKPLLQVL+IK+I S++ QERYR L+SD VS+Q AM+A
Sbjct: 1 MPVSLTPNAITAIHDGDVNLKPLLQVLEIKMIGRSQERSQERYRFLISDGVSAQHAMVAV 60
Query: 59 QLNDQLRAGLVKRGSIVQLIEYICSPIQNRKIIVVLNMETIISDYEIIGNPKLFVETDFP 118
QLND++++G ++GSIVQLI+YICS ++ RK+IVVLNMETI+ E IGNP +F ETD
Sbjct: 61 QLNDRVKSGQFEKGSIVQLIDYICSDVKGRKLIVVLNMETIVQQSETIGNPTIFGETDTE 120
Query: 119 NQEAL-------PNNKM--------QNPSRSNSYHLPAQNASCNMQNXXXXXXXXXXXXX 163
Q+ P N++ + +R+ + QN + N +
Sbjct: 121 AQKTFSGTGNIPPPNRVVFNEPMVQHSVNRAPPRGVNIQNQANNTPSFRPSVQPSYQPPA 180
Query: 164 XXXGHGAIVRNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLL 223
HG I++NEAPARVIPIAALNPYQGRWAIKARVTAKGD+RRYNNAKGDGKVFSFDLL
Sbjct: 181 SYRNHGPIMKNEAPARVIPIAALNPYQGRWAIKARVTAKGDIRRYNNAKGDGKVFSFDLL 240
Query: 224 DADGGEIRVTCFNTAVDRFYDVIEVGRVYLISRGNLKPAQKNFNHLKNEWEILLDLSSAV 283
D DGGEIRVTCFN VDRFYDV EVG+VYLIS+G+LKPAQKNFNHLKNEWEI L+ +S V
Sbjct: 241 DYDGGEIRVTCFNALVDRFYDVTEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTV 300
Query: 284 ELCPDEDGSIPKQQFSFRSISDIENADSNSILDVIGVVISVKPSVPILRKNGMETQRRIL 343
ELCPDEDGSIPKQQFSFR ISDIENA++N+ILDVIGVV SV PSVPILRKNGMET RRIL
Sbjct: 301 ELCPDEDGSIPKQQFSFRPISDIENAENNTILDVIGVVTSVNPSVPILRKNGMETHRRIL 360
Query: 344 NLKDCSGRSVELTLWGEFCNREGQMLQEMMDAGFFPTLAVKAGKVNDFSGKSIGTISSTQ 403
NLKD SG++VE+TLWGEFCNR+G+ L+EM+D+ F P LA+KAGKV+DFSGKS+GTISSTQ
Sbjct: 361 NLKDESGKAVEVTLWGEFCNRDGRQLEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISSTQ 420
Query: 404 LFINPDFSEAHSLREWYDRVGKDSASLSISKDIIPGG-PKNDVRKTVSQIKDEGLGRSEK 462
LFINPDF EAH LR W+D GKD+AS SIS+D +PGG +N++RK VSQIK+EGLGRS+K
Sbjct: 421 LFINPDFPEAHKLRTWFDYGGKDTASFSISRDTMPGGVSRNEIRKNVSQIKEEGLGRSDK 480
Query: 463 PDWMTLRATISFIKTDTFCYTACPLMIGDRQCNKKVTRSG-NRWQCDRCNQEFDECDYRY 521
PDW+T++ATISFIKTD+FCYTACPLMIGD+QCNKKVTRSG NRW CDRCNQE DECDYRY
Sbjct: 481 PDWITVKATISFIKTDSFCYTACPLMIGDKQCNKKVTRSGTNRWLCDRCNQESDECDYRY 540
Query: 522 LLQAQILDHTGITWVTAFQETGEEIMGYPAKELYMLKYEQQDDEKFAGIIKSRLFNQFVF 581
LLQ QI DHTG+TW+TAFQETGEEIMG PAK+LY +KYE + +E+FA I++ RLF+Q++
Sbjct: 541 LLQVQIQDHTGLTWITAFQETGEEIMGCPAKKLYAMKYELEKEEEFAEIVRDRLFHQYML 600
Query: 582 RLKIKEELYGDEQRVKVTVMKAGEVSYSSESGYMLDLISK 621
+LKIKEE YGDEQRVK+TV+K +V+Y+SES YMLDL+ +
Sbjct: 601 KLKIKEESYGDEQRVKMTVVKVDKVNYTSESKYMLDLLVR 640
>AT2G06510.2 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A |
replication protein A 1A | chr2:2585215-2587601 FORWARD
LENGTH=617
Length = 617
Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/617 (67%), Positives = 504/617 (81%), Gaps = 19/617 (3%)
Query: 24 LQVLDIKLISNSKQ--QERYRILLSDAVSSQQAMLATQLNDQLRAGLVKRGSIVQLIEYI 81
+ VL+IK+I S++ QERYR L+SD VS+Q AM+A QLND++++G ++GSIVQLI+YI
Sbjct: 1 MPVLEIKMIGRSQERSQERYRFLISDGVSAQHAMVAVQLNDRVKSGQFEKGSIVQLIDYI 60
Query: 82 CSPIQNRKIIVVLNMETIISDYEIIGNPKLFVETDFPNQEAL-------PNNKM------ 128
CS ++ RK+IVVLNMETI+ E IGNP +F ETD Q+ P N++
Sbjct: 61 CSDVKGRKLIVVLNMETIVQQSETIGNPTIFGETDTEAQKTFSGTGNIPPPNRVVFNEPM 120
Query: 129 --QNPSRSNSYHLPAQNASCNMQNXXXXXXXXXXXXXXXXGHGAIVRNEAPARVIPIAAL 186
+ +R+ + QN + N + HG I++NEAPARVIPIAAL
Sbjct: 121 VQHSVNRAPPRGVNIQNQANNTPSFRPSVQPSYQPPASYRNHGPIMKNEAPARVIPIAAL 180
Query: 187 NPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDADGGEIRVTCFNTAVDRFYDVI 246
NPYQGRWAIKARVTAKGD+RRYNNAKGDGKVFSFDLLD DGGEIRVTCFN VDRFYDV
Sbjct: 181 NPYQGRWAIKARVTAKGDIRRYNNAKGDGKVFSFDLLDYDGGEIRVTCFNALVDRFYDVT 240
Query: 247 EVGRVYLISRGNLKPAQKNFNHLKNEWEILLDLSSAVELCPDEDGSIPKQQFSFRSISDI 306
EVG+VYLIS+G+LKPAQKNFNHLKNEWEI L+ +S VELCPDEDGSIPKQQFSFR ISDI
Sbjct: 241 EVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDGSIPKQQFSFRPISDI 300
Query: 307 ENADSNSILDVIGVVISVKPSVPILRKNGMETQRRILNLKDCSGRSVELTLWGEFCNREG 366
ENA++N+ILDVIGVV SV PSVPILRKNGMET RRILNLKD SG++VE+TLWGEFCNR+G
Sbjct: 301 ENAENNTILDVIGVVTSVNPSVPILRKNGMETHRRILNLKDESGKAVEVTLWGEFCNRDG 360
Query: 367 QMLQEMMDAGFFPTLAVKAGKVNDFSGKSIGTISSTQLFINPDFSEAHSLREWYDRVGKD 426
+ L+EM+D+ F P LA+KAGKV+DFSGKS+GTISSTQLFINPDF EAH LR W+D GKD
Sbjct: 361 RQLEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISSTQLFINPDFPEAHKLRTWFDYGGKD 420
Query: 427 SASLSISKDIIPGG-PKNDVRKTVSQIKDEGLGRSEKPDWMTLRATISFIKTDTFCYTAC 485
+AS SIS+D +PGG +N++RK VSQIK+EGLGRS+KPDW+T++ATISFIKTD+FCYTAC
Sbjct: 421 TASFSISRDTMPGGVSRNEIRKNVSQIKEEGLGRSDKPDWITVKATISFIKTDSFCYTAC 480
Query: 486 PLMIGDRQCNKKVTRSG-NRWQCDRCNQEFDECDYRYLLQAQILDHTGITWVTAFQETGE 544
PLMIGD+QCNKKVTRSG NRW CDRCNQE DECDYRYLLQ QI DHTG+TW+TAFQETGE
Sbjct: 481 PLMIGDKQCNKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTWITAFQETGE 540
Query: 545 EIMGYPAKELYMLKYEQQDDEKFAGIIKSRLFNQFVFRLKIKEELYGDEQRVKVTVMKAG 604
EIMG PAK+LY +KYE + +E+FA I++ RLF+Q++ +LKIKEE YGDEQRVK+TV+K
Sbjct: 541 EIMGCPAKKLYAMKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQRVKMTVVKVD 600
Query: 605 EVSYSSESGYMLDLISK 621
+V+Y+SES YMLDL+ +
Sbjct: 601 KVNYTSESKYMLDLLVR 617
>AT5G45400.1 | Symbols: RPA70C, ATRPA70C | Replication factor-A
protein 1-related | chr5:18398990-18401644 FORWARD
LENGTH=853
Length = 853
Score = 611 bits (1576), Expect = e-175, Method: Compositional matrix adjust.
Identities = 281/457 (61%), Positives = 360/457 (78%), Gaps = 3/457 (0%)
Query: 169 GAIVRNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDADGG 228
G + RNEAP R+ PIAALNPYQGRW IK RVT+K DLRR+NN +G+GK+FSFDLLDADGG
Sbjct: 288 GPVARNEAPPRINPIAALNPYQGRWTIKVRVTSKADLRRFNNPRGEGKLFSFDLLDADGG 347
Query: 229 EIRVTCFNTAVDRFYDVIEVGRVYLISRGNLKPAQKNFNHLKNEWEILLDLSSAVELCPD 288
EIRVTCFN AVD+F+D I VG VYLISRGNLKPAQKNFNHL N++EI LD +S ++ C D
Sbjct: 348 EIRVTCFNDAVDQFFDKIVVGNVYLISRGNLKPAQKNFNHLPNDYEIHLDSASTIQPCED 407
Query: 289 EDGSIPKQQFSFRSISDIENADSNSILDVIGVVISVKPSVPILRKNGMETQRRILNLKDC 348
DG+IP+ F FR+I DIEN ++NS DVIG+V S+ P+V I+RKN E Q+R L LKD
Sbjct: 408 -DGTIPRYHFHFRNIGDIENMENNSTTDVIGIVSSISPTVAIMRKNLTEVQKRSLQLKDM 466
Query: 349 SGRSVELTLWGEFCNREGQMLQEMMDAGFFPTLAVKAGKVNDFSGKSIGTISSTQLFINP 408
SGRSVE+T+WG FCN EGQ LQ + D+G FP LA+KAG++ +F+GK + TI ++Q FI P
Sbjct: 467 SGRSVEVTMWGNFCNAEGQKLQNLCDSGVFPVLALKAGRIGEFNGKQVSTIGASQFFIEP 526
Query: 409 DFSEAHSLREWYDRVGKDSASLSISKDIIPGGPKNDVRKTVSQIKDEGLGRSEKPDWMTL 468
DF EA LR+WY+R G+++ SIS++ G + +VRK ++QIKDE LG SEKPDW+T+
Sbjct: 527 DFPEARELRQWYEREGRNAHFTSISRE-FSGVGRQEVRKVIAQIKDEKLGTSEKPDWITV 585
Query: 469 RATISFIKTDTFCYTACPLMIGDRQCNKKVTRSGN-RWQCDRCNQEFDECDYRYLLQAQI 527
ATISF+K + FCYTACP+M GDR C+KKVT +G+ W+C++C++ DECDYRY+LQ Q+
Sbjct: 586 CATISFMKVENFCYTACPIMNGDRPCSKKVTNNGDGTWRCEKCDKCVDECDYRYILQIQL 645
Query: 528 LDHTGITWVTAFQETGEEIMGYPAKELYMLKYEQQDDEKFAGIIKSRLFNQFVFRLKIKE 587
DHT +TW TAFQE GEEIMG AK+LY +KYE QD+EKF II+S F +++F+LKIKE
Sbjct: 646 QDHTDLTWATAFQEAGEEIMGMSAKDLYYVKYENQDEEKFEDIIRSVAFTKYIFKLKIKE 705
Query: 588 ELYGDEQRVKVTVMKAGEVSYSSESGYMLDLISKFKV 624
E Y DEQRVK TV+KA +++YSS + +ML+ I K K+
Sbjct: 706 ETYSDEQRVKATVVKAEKLNYSSNTRFMLEAIDKLKI 742
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 72/119 (60%), Gaps = 9/119 (7%)
Query: 1 MAVNLTANAIPAIVSGDL----NLKPLLQVLDIKLIS-----NSKQQERYRILLSDAVSS 51
MAV+LT + +++G++ ++ P+LQV ++KLI N + RY+ LLSD
Sbjct: 1 MAVSLTEGVVMKMLNGEVTSETDMMPVLQVTELKLIQSKLHQNQESSNRYKFLLSDGTDL 60
Query: 52 QQAMLATQLNDQLRAGLVKRGSIVQLIEYICSPIQNRKIIVVLNMETIISDYEIIGNPK 110
ML T LN + G ++ GS+++L YIC+ IQ R+I+V++ +E I+ IIGNPK
Sbjct: 61 AAGMLNTSLNSLVNQGTIQLGSVIRLTHYICNLIQTRRIVVIMQLEVIVEKCNIIGNPK 119
>AT4G19130.1 | Symbols: | Replication factor-A protein 1-related |
chr4:10466618-10469092 REVERSE LENGTH=784
Length = 784
Score = 583 bits (1504), Expect = e-167, Method: Compositional matrix adjust.
Identities = 266/457 (58%), Positives = 356/457 (77%), Gaps = 2/457 (0%)
Query: 169 GAIVRNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDADGG 228
G + RNEAP ++IP+ AL+PY GRW IKARVT K L++Y+N +G+GKVF+FDLLDADGG
Sbjct: 217 GPVARNEAPPKIIPVNALSPYSGRWTIKARVTNKAALKQYSNPRGEGKVFNFDLLDADGG 276
Query: 229 EIRVTCFNTAVDRFYDVIEVGRVYLISRGNLKPAQKNFNHLKNEWEILLDLSSAVELCPD 288
EIRVTCFN D+FYD I VG +YLISRG+L+PAQKNFNHL+N++EI+LD +S ++ C +
Sbjct: 277 EIRVTCFNAVADQFYDQIVVGNLYLISRGSLRPAQKNFNHLRNDYEIMLDNASTIKQCYE 336
Query: 289 EDGSIPKQQFSFRSISDIENADSNSILDVIGVVISVKPSVPILRKNGMETQRRILNLKDC 348
ED +IP+ QF FR+I DIE+ ++N I+DVIG+V S+ P+V I RKNG T +R L LKD
Sbjct: 337 EDAAIPRHQFHFRTIGDIESMENNCIVDVIGIVSSISPTVTITRKNGTATPKRSLQLKDM 396
Query: 349 SGRSVELTLWGEFCNREGQMLQEMMDAGFFPTLAVKAGKVNDFSGKSIGTISSTQLFINP 408
SGRSVE+T+WG+FCN EGQ LQ + D+G FP LAVKAG++++F+GK++ TI S+QLFI+P
Sbjct: 397 SGRSVEVTMWGDFCNAEGQRLQSLCDSGVFPVLAVKAGRISEFNGKTVSTIGSSQLFIDP 456
Query: 409 DFSEAHSLREWYDRVGKDSASLSISKDIIPGGPKNDVRKTVSQIKDEGLGRSEKPDWMTL 468
DF EA L+ W++R GK +S+S++ G K DVRKT+SQIKDE LG SEKPDW+T+
Sbjct: 457 DFVEAEKLKNWFEREGKSVPCISLSRE-FSGSGKVDVRKTISQIKDEKLGTSEKPDWITV 515
Query: 469 RATISFIKTDTFCYTACPLMIGDRQCNKKVTRSGN-RWQCDRCNQEFDECDYRYLLQAQI 527
ATI ++K D FCYTACP+M GDR C+KKVT +G+ W+C++C++ DECDYRY+LQ QI
Sbjct: 516 SATILYLKFDNFCYTACPIMNGDRPCSKKVTDNGDGTWRCEKCDKSVDECDYRYILQLQI 575
Query: 528 LDHTGITWVTAFQETGEEIMGYPAKELYMLKYEQQDDEKFAGIIKSRLFNQFVFRLKIKE 587
DHT +T VTAFQE GEEIMG AK+LY +K E +D+EKF II+ F ++ F+LK+KE
Sbjct: 576 QDHTDLTCVTAFQEAGEEIMGISAKDLYYVKNEHKDEEKFEDIIRKVAFTKYNFKLKVKE 635
Query: 588 ELYGDEQRVKVTVMKAGEVSYSSESGYMLDLISKFKV 624
E + DEQRVK TV+K +++YS+++ ML + K +
Sbjct: 636 ETFSDEQRVKATVVKVDKLNYSADTRTMLGAMDKLRT 672
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 72/115 (62%), Gaps = 6/115 (5%)
Query: 1 MAVNLTANAIPAIVSGDL----NLKPLLQVLDIKLI--SNSKQQERYRILLSDAVSSQQA 54
M V+LTA AI I++G++ ++ P+LQV D+K I +ER+R++LSD Q
Sbjct: 1 MEVSLTAGAIGKIMNGEVTTEADMIPVLQVTDLKQIMAQQDPTRERFRMVLSDGTYLHQG 60
Query: 55 MLATQLNDQLRAGLVKRGSIVQLIEYICSPIQNRKIIVVLNMETIISDYEIIGNP 109
ML T LN+ ++ G ++ GSIV+L ++ I+ R+I++V +E + +IIG+P
Sbjct: 61 MLGTDLNNLVKEGTLQPGSIVRLTRFVGDVIKGRRIVIVPQLEVLKQISDIIGHP 115
>AT5G08020.1 | Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B |
chr5:2572107-2574879 FORWARD LENGTH=604
Length = 604
Score = 303 bits (777), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 205/621 (33%), Positives = 323/621 (52%), Gaps = 66/621 (10%)
Query: 23 LLQVLDIKLISNSKQQERYRILLSDAVSSQQAMLATQLNDQLRAGLVKRGSIVQLIEYIC 82
++QV+D+K N RY +D +AML L + +G ++ +++L+EY
Sbjct: 29 VVQVVDLKPAGN-----RYTFSANDGKMKIKAMLPATLTSDIISGKIQNLGLIRLLEYTV 83
Query: 83 SPIQNR---KIIVVLNMETIIS--DYEIIGNPKLFVETDF-PNQEALPNNKMQ--NPSRS 134
+ I + K +++ E + S D EI K P E + + Q N R
Sbjct: 84 NDIPGKSEEKYMLITKCEAVASALDSEIKAEIKASTGIMLKPKHEFVAKSASQIINEQRG 143
Query: 135 NSYHLPAQNASCNMQNXXXXXXXXXXXXXXXXGHGAIVRNEAPARVIPIAALNPYQGRWA 194
N+ PA A+ R RV P+ +LNPYQG W
Sbjct: 144 NA--APA-------------------------ARMAMTR-----RVHPLVSLNPYQGSWT 171
Query: 195 IKARVTAKGDLRRYNNAKGDGKVFSFDLLDADGGEIRVTCFNTAVDRFYDVIEVGRVYLI 254
IK RVT KG +R Y NA+G+G VF+ +L D +G +I+ T FN A +FYD E+G+VY I
Sbjct: 172 IKVRVTNKGVMRTYKNARGEGCVFNVELTDEEGTQIQATMFNAAARKFYDRFEMGKVYYI 231
Query: 255 SRGNLKPAQKNFNHLKNEWEILLDLSSAVELCPDEDGSIPKQQFSFRSISDIEN-ADSNS 313
SRG+LK A K F ++N++E+ L+ +S VE +E+ P+ +F+F I ++ +
Sbjct: 232 SRGSLKLANKQFKTVQNDYEMTLNENSEVEEASNEEMFTPETKFNFVPIDELGTYVNQKD 291
Query: 314 ILDVIGVVISVKPSVPILRKNGMET-QRRILNLKDCSGRSVELTLWGEFCNREGQMLQEM 372
++DVIGVV SV P++ I RKN E +R + L D + ++V ++LW + GQ L +M
Sbjct: 292 LIDVIGVVQSVSPTMSIRRKNDNEMIPKRDITLADETKKTVVVSLWNDLATGIGQELLDM 351
Query: 373 MDAGFFPTLAVKAGKVNDFSGKSIGTISSTQLFINPDFSEAHSLREWYDRVGKDSASLSI 432
D P +A+K+ KV F G S+ TIS + + INP+ EA L+ WYD GK++ S+S
Sbjct: 352 ADN--HPVIAIKSLKVGAFQGVSLSTISRSNVVINPNSPEATKLKSWYDAEGKET-SMSA 408
Query: 433 SKDIIPGGPKNDVRKTVSQ-------IKDEGLGRSEKPDWMTLRATISFIKTD-TFCYTA 484
+ N R S + LG EKP + + RA ISFIK D T Y A
Sbjct: 409 IGSGMSSSANNGSRSMYSDRVFLSHITSNPSLGE-EKPVFFSTRAYISFIKPDQTMWYRA 467
Query: 485 CPLMIGDRQCNKKVTRSGNR-WQCDRCNQEFDECDYRYLLQAQILDHTGITWVTAFQETG 543
C + CNKKVT + + + C+ C ++ EC RY++ ++ D TG TW++AF +
Sbjct: 468 C------KTCNKKVTEAMDSGYWCESCQKKDQECSLRYIMAVKVSDSTGETWLSAFNDEA 521
Query: 544 EEIMGYPAKELYMLKYEQQDDEKFAGIIKSRLFNQFVFRLKIKEELYGDEQRVKVTVMKA 603
E+I+G A +L LK E+ + +F +K ++ +FR+ + ++ Y E+R ++TV
Sbjct: 522 EKIIGCTADDLNDLKSEEGEVNEFQTKLKEATWSSHLFRISVSQQEYNSEKRQRITVRGV 581
Query: 604 GEVSYSSESGYMLDLISKFKV 624
+ +++E+ +L ISK K
Sbjct: 582 SPIDFAAETRLLLQDISKNKT 602
>AT5G61000.1 | Symbols: RPA70D, ATRPA70D | Replication factor-A
protein 1-related | chr5:24549682-24552641 REVERSE
LENGTH=629
Length = 629
Score = 293 bits (750), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 203/646 (31%), Positives = 340/646 (52%), Gaps = 50/646 (7%)
Query: 1 MAVNLTANAI------PAIVSGDLNLKPLLQVLDIKLISNSKQQERYRILLSDAVSSQQA 54
M ++T +AI P+ S + ++QV+D+K I N RY +D + +A
Sbjct: 1 MQTSVTPDAISTVLSNPSFDSSSDRSEIVVQVVDLKPIGN-----RYTFSANDGKTKVKA 55
Query: 55 MLATQLNDQLRAGLVKRGSIVQLIEYICSPIQNR--KIIVVLNMETIISDYEIIGNPKLF 112
M L ++ +G ++ +++LI++ + I ++ K +V E + S + + ++
Sbjct: 56 MFTASLTPEIISGKIQNLGLIRLIDFTVNDISSKSTKYFLVTKCEAVGS----VLDSEIN 111
Query: 113 VETDFPNQEALPNNKMQNPSRSNSYHLPAQNASCNMQNXXXXXXXXXXXXXXXXGHGAIV 172
+++ +EA + P + H P + + +
Sbjct: 112 LDSKSGEEEA------REPKKQKLEHSPVSPLNDVVSTGITLKPKQEFVAKSASQIMSEQ 165
Query: 173 R-NEAPA-------RVIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLD 224
R N APA RV P+ +LNPYQG W IK RVT KG +R Y NA+G+G VF+ +L D
Sbjct: 166 RGNAAPAARMAMTRRVHPLVSLNPYQGNWTIKVRVTNKGVMRNYKNARGEGCVFNVELTD 225
Query: 225 ADGGEIRVTCFNTAVDRFYDVIEVGRVYLISRGNLKPAQKNFNHLKNEWEILLDLSSAVE 284
+G +I+ T FN A +F+D ++G+VY ISRG+LK A K F ++N++E+ L+ +S VE
Sbjct: 226 EEGTQIQATMFNDAARKFFDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVE 285
Query: 285 LCPDEDGSIPKQQFSFRSISDIE-NADSNSILDVIGVVISVKPSVPILRKNGMET-QRRI 342
E+ IP+ +F+F I ++ + ++D+IGVV SV P++ I R+ E +R
Sbjct: 286 EASSEEMFIPETKFNFVPIEELGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRD 345
Query: 343 LNLKDCSGRSVELTLWGEFCNREGQMLQEMMDAGFFPTLAVKAGKVNDFSGKSIGTISST 402
+ L D S ++V ++LW + GQ L +M D P +A+K+ KV DF G S+ TIS +
Sbjct: 346 ITLADESRKTVVVSLWNDLATGIGQELLDMADQS--PVIAIKSLKVGDFQGVSLSTISRS 403
Query: 403 QLFINPDFSEAHSLREWYDRVGKDSASLSISKDIIPGGPKNDVRK------TVSQIKDEG 456
+ INP+ EA L+ W+D GK+ + SI + P KN R +S I
Sbjct: 404 NVVINPESPEAKKLKSWFDSEGKEISMSSIGSGMSPSA-KNGSRSLYTDRVLLSHITSNP 462
Query: 457 LGRSEKPDWMTLRATISFIKTD-TFCYTACPLMIGDRQCNKKVTRS-GNRWQCDRCNQEF 514
EKP + + RA ISFIK D T Y AC + CNKKVT + + + C+ C +++
Sbjct: 463 SLFEEKPVFFSTRAYISFIKPDQTMWYQAC------KTCNKKVTEALDSGYWCEGCQRKY 516
Query: 515 DECDYRYLLQAQILDHTGITWVTAFQETGEEIMGYPAKELYMLKYEQQDDEKFAGIIKSR 574
+EC RY++ ++ D +G TW+++F + E+I+G A EL LK E+ + ++ +K
Sbjct: 517 EECSLRYIMAVKVTDSSGETWISSFNDEAEKILGCSADELNKLKSEEGEVNEYQTKLKEA 576
Query: 575 LFNQFVFRLKIKEELYGDEQRVKVTVMKAGEVSYSSESGYMLDLIS 620
++ VFR+ + + Y E+R +VTV + +++E+ +L IS
Sbjct: 577 TWSSHVFRVSVTQNEYNGEKRQRVTVKGVAPLDFAAETRLLLQDIS 622
>AT1G52950.1 | Symbols: | Nucleic acid-binding, OB-fold-like
protein | chr1:19725483-19728007 FORWARD LENGTH=566
Length = 566
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 92/427 (21%), Positives = 188/427 (44%), Gaps = 43/427 (10%)
Query: 183 IAALNPYQGRWAIKARVTAKGDLRRYNN-AKGDGKVFSFDLLDADGGEIRVTCFNTAVDR 241
I L P++ W I+ ++ L +N+ KG G + L D DG +I+ + +
Sbjct: 10 IKNLKPFKTSWCIQVKI-----LHAWNHYTKGSGMSYEMMLADEDGNKIQAGIKKEHLLK 64
Query: 242 FYDVIEVGRVYLISRGNLKPAQKNFNHLKNEWEILLDLSSAVELCPDEDGSIPKQQFSFR 301
+++G +I ++ A + + + I + S+ P I +F
Sbjct: 65 LQRYVKIGHWTIIEEFSVTKASGLYRSTTHPYRINIQSSTRFSNSPTISDEIWLDLVNFN 124
Query: 302 SISDIENADSNSILDVIGVVISVKPSVPILRKNGMETQRRILNLKDCSGRSVELTLWGEF 361
+ D N +++VIG +++V + +L G T++ L+D + +LWG+F
Sbjct: 125 DVLS-GTLDQNKLVNVIGQLVNVG-EIQLLDVQGKPTKKIDFQLRDTDDNRLPCSLWGKF 182
Query: 362 CNREGQMLQEMMDAGFFPTLAVKAGKVNDFSGKSIGTIS----STQLFINPDFSEAHSLR 417
++ ++ +E + G ++ K+ + K I +IS ++++FINP +E +
Sbjct: 183 ADQIHKVSKESV--GGIVICLIRWAKLGHY--KEIRSISNAFDASEVFINPILTE---VE 235
Query: 418 EWYDRVGKDSASLSISKDIIPGGPKNDVRKTVSQIKDEGLGRSEKPDWMTLRATISFIKT 477
E+ + + D +L+I + PK R ++++E + E+ L+A+ K
Sbjct: 236 EFKNLLPSDGLALTIME------PKP--RFQPLRVREERSKQFERKTIAELKASFEVEKV 287
Query: 478 DTFCYTACPLM------IGDRQCNKKVTRSGNR---------WQCDRCNQEFDECDYRYL 522
C + +CNKKV +S ++CD+C + + RY
Sbjct: 288 KIICSILSIDLDYSWYYYAHIKCNKKVFKSKKTLSSGAKKIIYRCDKCATDVTSIEARYW 347
Query: 523 LQAQILDHTGITWVTAFQETGEEIMGYPAKELYMLKYEQQDD-EKFAGIIKSRLFNQFVF 581
L I+D+TG + + F E I+G PA EL + EQ D+ + ++K+ + + F
Sbjct: 348 LHLDIMDNTGESKLMLFDSFVEPIIGCPATELLDVTNEQIDEPQPLPDVVKNIIGKTYQF 407
Query: 582 RLKIKEE 588
+ ++++
Sbjct: 408 LVCVEQD 414