Miyakogusa Predicted Gene
- Lj4g3v2179260.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2179260.1 Non Chatacterized Hit- tr|K3ZXA5|K3ZXA5_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si031237,64.06,2e-19,seg,NULL; GCK,GCK;
coiled-coil,NULL,CUFF.50426.1
(117 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14060.1 | Symbols: | GCK domain-containing protein | chr1:4... 100 2e-22
AT5G02210.1 | Symbols: | GCK domain-containing protein | chr5:4... 68 1e-12
AT5G57640.1 | Symbols: | GCK domain-containing protein | chr5:2... 62 5e-11
AT5G57570.1 | Symbols: | GCK domain-containing protein | chr5:2... 59 6e-10
AT1G23201.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 45 7e-06
>AT1G14060.1 | Symbols: | GCK domain-containing protein |
chr1:4817354-4817893 REVERSE LENGTH=179
Length = 179
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 49/58 (84%)
Query: 36 CGFCLFMKGGGCKDSFIDWENCVQEAEKNNEDLVEKCAQVTARLKQCMDAHADYYEPI 93
CGFCLFMKGGGCKDSF+ WE CV+ AEKN ED+V C +VT+ LK+CMD H+DYY+PI
Sbjct: 82 CGFCLFMKGGGCKDSFVAWEECVEAAEKNKEDIVTNCMEVTSMLKKCMDEHSDYYQPI 139
>AT5G02210.1 | Symbols: | GCK domain-containing protein |
chr5:439253-439874 REVERSE LENGTH=161
Length = 161
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 38 FCLFMKGGGCKDSFIDWE---NCVQEAEKNNEDLVEKCAQVTARLKQCMDAHADYYEPI 93
F FMKGGGCK+SF W N +E + N+DLV KCA + +CMD H+DYY PI
Sbjct: 80 FVEFMKGGGCKESFTAWNDDCNFTEEEAEKNKDLVTKCAGLFGTFSKCMDTHSDYYHPI 138
>AT5G57640.1 | Symbols: | GCK domain-containing protein |
chr5:23344766-23345446 FORWARD LENGTH=226
Length = 226
Score = 62.4 bits (150), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 37/58 (63%)
Query: 36 CGFCLFMKGGGCKDSFIDWENCVQEAEKNNEDLVEKCAQVTARLKQCMDAHADYYEPI 93
C C F+KGG CK++F + ENC EA+KNNED V KC + K CM + YYEP+
Sbjct: 84 CPLCQFIKGGECKEAFTELENCCDEAKKNNEDHVSKCKEARLIFKTCMYDNPVYYEPL 141
>AT5G57570.1 | Symbols: | GCK domain-containing protein |
chr5:23313784-23314194 REVERSE LENGTH=136
Length = 136
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 36 CGFCLFMKGGGCKDSFIDWENCVQEAEKNNEDL-VEKCAQVTARLKQCMDAHADYYEPI 93
C C F+KGG CK+SFI E CV EAE++ E+ KC +V A+ K CM + YYEPI
Sbjct: 53 CRLCRFIKGGECKESFIALEQCVDEAEESGEESDFTKCKEVRAKFKTCMYENPVYYEPI 111
>AT1G23201.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
GCK (InterPro:IPR012891); BEST Arabidopsis thaliana
protein match is: GCK domain-containing protein
(TAIR:AT5G02210.1); Has 106 Blast hits to 71 proteins in
9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 106; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr1:8230209-8230775 FORWARD
LENGTH=188
Length = 188
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 38 FCLFMKGGGCKDSFIDWENCVQEAEKNNEDLVEKCAQVTARLKQCMDAHADYYEPI 93
F FM G CK++F+ W + +E+ KNN+ A T + +C+ AH+DYY P+
Sbjct: 105 FTKFMTRGACKEAFMAWIDFCKESRKNNKSCRHNPAMDT--MLKCVKAHSDYYHPL 158