Miyakogusa Predicted Gene

Lj4g3v2174020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2174020.1 Non Chatacterized Hit- tr|Q5ZB13|Q5ZB13_ORYSJ
Putative uncharacterized protein OSJNBb0024F06.3
OS=Or,56.41,0.00000000000001,zf-LYAR,Zinc finger, C2H2, LYAR-type;
zf-met,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
,CUFF.50414.1
         (137 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G19385.1 | Symbols:  | zinc ion binding | chr2:8387149-838858...   217   2e-57
AT2G19380.1 | Symbols:  | RNA recognition motif (RRM)-containing...   132   5e-32

>AT2G19385.1 | Symbols:  | zinc ion binding | chr2:8387149-8388581
           FORWARD LENGTH=275
          Length = 275

 Score =  217 bits (552), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 99/132 (75%), Positives = 111/132 (84%)

Query: 1   MVWFQCEDCGDNLKKPKLPSHFRTCSAYKLSCIDCGQIFGRDTVQDHTQCITEAEKYGPK 60
           MVWFQCEDCG++LKKPK+PSHF+ C A KLSCIDCG++FGRDTVQ H QCITEAEKYGPK
Sbjct: 1   MVWFQCEDCGESLKKPKVPSHFKMCRANKLSCIDCGEMFGRDTVQGHNQCITEAEKYGPK 60

Query: 61  GQGKTVNNAAAKPNKDSKQKPEVDINVGLSERPPWFCSLCNTKATSKQALLLHADGKKHR 120
           GQ K+ N   AKP   SKQ+P+ DINVGLS R PWFCSLCNTKATS+Q LL HADGKKHR
Sbjct: 61  GQSKSANGTPAKPKDISKQEPDFDINVGLSNRYPWFCSLCNTKATSQQTLLAHADGKKHR 120

Query: 121 VKARAFLASKQQ 132
            KA+AF A +QQ
Sbjct: 121 GKAKAFHARQQQ 132


>AT2G19380.1 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr2:8383856-8386604 FORWARD LENGTH=613
          Length = 613

 Score =  132 bits (333), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 65/123 (52%), Positives = 76/123 (61%), Gaps = 10/123 (8%)

Query: 1   MVWFQCEDCGDNLKKPKLPSHFRTCSAYKLSCIDCGQIFGRDTVQDHTQCITEAEKYGPK 60
           MVWFQC+DCG+NLKKP+LP H   C+A K SCIDCG +FG+ +V  H QCITEAEKYGP 
Sbjct: 1   MVWFQCDDCGENLKKPRLPRHMSMCTATKFSCIDCGNMFGQVSVHYHNQCITEAEKYGP- 59

Query: 61  GQGKTVNNAAAKPNKDSKQKPEVDINVGLSERPPWFCSLCNTKATSKQALLLHADGKKHR 120
                         + SKQK + DIN  L     WFCSLCN   T +Q    H  GKKH+
Sbjct: 60  --------MVRSNGESSKQKHDFDINAELF-NSQWFCSLCNATMTCEQDYFAHVYGKKHQ 110

Query: 121 VKA 123
            KA
Sbjct: 111 EKA 113



 Score = 76.3 bits (186), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 54/85 (63%), Gaps = 1/85 (1%)

Query: 52  TEAEKYGPKGQGKTVNNAAAKPNKD-SKQKPEVDINVGLSERPPWFCSLCNTKATSKQAL 110
            + E++  + Q +     +    KD SKQ+ EVDINVGLS   PWFCSLCN KAT +Q L
Sbjct: 180 VKVERFDAEQQKRQSTQHSTVDKKDYSKQQIEVDINVGLSNCYPWFCSLCNVKATCQQNL 239

Query: 111 LLHADGKKHRVKARAFLASKQQPVQ 135
           L HA+G+KHR     F A++QQ ++
Sbjct: 240 LSHANGRKHRENVELFDATQQQQLE 264