Miyakogusa Predicted Gene

Lj4g3v2172560.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2172560.1 tr|G7IIL3|G7IIL3_MEDTR RecA OS=Medicago
truncatula GN=MTR_2g039670 PE=3 SV=1,79.43,0,RECA,DNA recombination
and repair protein RecA; RecA,DNA recombination and repair protein
RecA; RECA,CUFF.50383.1
         (288 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G19490.1 | Symbols:  | recA DNA recombination family protein ...   318   2e-87
AT3G10140.1 | Symbols: RECA3 | RECA homolog 3 | chr3:3134984-313...   179   2e-45
AT3G32920.1 | Symbols:  | P-loop containing nucleoside triphosph...   174   7e-44
AT1G79050.1 | Symbols:  | recA DNA recombination family protein ...   165   3e-41
AT1G79050.2 | Symbols:  | recA DNA recombination family protein ...   134   1e-31
AT3G32920.2 | Symbols:  | P-loop containing nucleoside triphosph...   109   3e-24

>AT2G19490.1 | Symbols:  | recA DNA recombination family protein |
           chr2:8441732-8444006 FORWARD LENGTH=430
          Length = 430

 Score =  318 bits (816), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 155/231 (67%), Positives = 176/231 (76%)

Query: 9   HAGYCAFVDAEHALDRTLAESIGVNTNNLLLSQPDCGEQALSLVDTLIRSGXXXXXXXXX 68
             G C FVDAEHALD +LA++IGVNT NLLLSQPDCGEQALSLVDTLIRSG         
Sbjct: 139 QGGTCVFVDAEHALDSSLAKAIGVNTENLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDS 198

Query: 69  XXXXXPKGELDGEMGDAHMAMQARLMSQAXXXXXXXXXXXXXXXIFINQVRSKISTFGGF 128
                PKGEL+GEMGDAHMAMQARLMSQA               IFINQVRSK+STFGGF
Sbjct: 199 VAALVPKGELEGEMGDAHMAMQARLMSQALRKLSHSLSLSQTLLIFINQVRSKLSTFGGF 258

Query: 129 GGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEEIIGSQVVVKVVKNKLAPPFKTAEFEL 188
           GGPTEVTCGGNALKFYAS+RLNIKRIG +KKGEE  GSQV VK+VKNKLAPPF+TA+FEL
Sbjct: 259 GGPTEVTCGGNALKFYASMRLNIKRIGLIKKGEETTGSQVSVKIVKNKLAPPFRTAQFEL 318

Query: 189 QFGKGISRKAEIIKLSLKYKLITKAGSMYYYNEQSFRGGDALKDFLAENPT 239
           +FGKGI +  EII LS+K+K I K G+ Y  N +++ G +ALK FL +N +
Sbjct: 319 EFGKGICKITEIIDLSIKHKFIAKNGTFYNLNGKNYHGKEALKRFLKQNES 369


>AT3G10140.1 | Symbols: RECA3 | RECA homolog 3 |
           chr3:3134984-3137069 FORWARD LENGTH=389
          Length = 389

 Score =  179 bits (453), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/230 (39%), Positives = 136/230 (59%)

Query: 11  GYCAFVDAEHALDRTLAESIGVNTNNLLLSQPDCGEQALSLVDTLIRSGXXXXXXXXXXX 70
           GYCA++DAE+A+D +LAESIGVNT  LL+S+P   E+ L++VD L +SG           
Sbjct: 145 GYCAYLDAENAMDPSLAESIGVNTEELLISRPSSAEKMLNIVDVLTKSGSVDVIVVDSVA 204

Query: 71  XXXPKGELDGEMGDAHMAMQARLMSQAXXXXXXXXXXXXXXXIFINQVRSKISTFGGFGG 130
              P+ ELD  +G+ +   Q+R+M+QA               +F+NQVRS + +   F  
Sbjct: 205 ALAPQCELDAPVGERYRDTQSRIMTQALRKIHYSVGYSQTLIVFLNQVRSHVKSNMHFPH 264

Query: 131 PTEVTCGGNALKFYASVRLNIKRIGFVKKGEEIIGSQVVVKVVKNKLAPPFKTAEFELQF 190
             EVTCGGNAL F+A++RL + R G +K   +I G  V V+VVKNKLAP  K +E  + F
Sbjct: 265 AEEVTCGGNALPFHAAIRLKMIRTGLIKTANKISGLNVCVQVVKNKLAPGKKKSELGIHF 324

Query: 191 GKGISRKAEIIKLSLKYKLITKAGSMYYYNEQSFRGGDALKDFLAENPTA 240
           G G   + E+++L+ ++ +I + G+ Y+   +   G DA + +L EN  A
Sbjct: 325 GHGFYVEREVLELACEHGVILREGTSYFIEGEVIEGKDAAEKYLVENKEA 374


>AT3G32920.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr3:13485399-13486713
           REVERSE LENGTH=226
          Length = 226

 Score =  174 bits (441), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 90/141 (63%), Positives = 100/141 (70%), Gaps = 6/141 (4%)

Query: 22  LDRTLAESIGVNTNNLLLSQPDCGEQALSLVDTLIRSGXXXXXXXXXXXXXXPKGELDGE 81
           L R+LA++IGVNT NLLLSQPDCG+QALSLVDTLI+SG              PKGELDGE
Sbjct: 59  LIRSLAKAIGVNTENLLLSQPDCGKQALSLVDTLIQSGSVDVIVVDSVAALVPKGELDGE 118

Query: 82  MGDAHMAMQARLMSQAXXXXXXXXXXXXXXXIFINQVRSKISTFGGFGGPTEVTCGGNAL 141
           MGDAHMA+QARLMSQA               IFINQVR +      FGGPTEVT GGNAL
Sbjct: 119 MGDAHMAIQARLMSQALRKFSHSLLLSQTLLIFINQVRER------FGGPTEVTSGGNAL 172

Query: 142 KFYASVRLNIKRIGFVKKGEE 162
           KFYA +RL+IKRIG +KKGEE
Sbjct: 173 KFYAPMRLDIKRIGLIKKGEE 193


>AT1G79050.1 | Symbols:  | recA DNA recombination family protein |
           chr1:29737084-29740140 REVERSE LENGTH=439
          Length = 439

 Score =  165 bits (418), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 93/231 (40%), Positives = 133/231 (57%), Gaps = 6/231 (2%)

Query: 11  GYCAFVDAEHALDRTLAESIGVNTNNLLLSQPDCGEQALSLVDTLIRSGXXXXXXXXXXX 70
           G    VDAEHA D   ++++GV+  NL++ QPD GE AL   D + RSG           
Sbjct: 164 GNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEMALETADRMCRSGAVDLICVDSVS 223

Query: 71  XXXPKGELDGEMGDAHMAMQARLMSQAXXXXXXXXXXXXXXXIFINQVRSKISTFGGFGG 130
              P+ E++GE+G   M +QARLMSQA               IF+NQ+R KI  +  +G 
Sbjct: 224 ALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVY--YGN 281

Query: 131 PTEVTCGGNALKFYASVRLNIKRIGFVK--KGEEIIGSQVVVKVVKNKLAPPFKTAEFEL 188
           P EVT GG ALKF+ASVRL I+  G +K  KG+E IG +  V+V K+K++ P+K AEFE+
Sbjct: 282 P-EVTSGGIALKFFASVRLEIRSAGKIKSSKGDEDIGLRARVRVQKSKVSRPYKQAEFEI 340

Query: 189 QFGKGISRKAEIIKLSLKYKLITKAGSMYYYNEQSF-RGGDALKDFLAENP 238
            FG+G+S+   ++  +   +++ K GS Y Y +Q   +G +     L ENP
Sbjct: 341 MFGEGVSKLGCVLDCAEIMEVVVKKGSWYSYEDQRLGQGREKALQHLRENP 391


>AT1G79050.2 | Symbols:  | recA DNA recombination family protein |
           chr1:29737364-29740140 REVERSE LENGTH=343
          Length = 343

 Score =  134 bits (336), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/177 (42%), Positives = 102/177 (57%), Gaps = 5/177 (2%)

Query: 11  GYCAFVDAEHALDRTLAESIGVNTNNLLLSQPDCGEQALSLVDTLIRSGXXXXXXXXXXX 70
           G    VDAEHA D   ++++GV+  NL++ QPD GE AL   D + RSG           
Sbjct: 164 GNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEMALETADRMCRSGAVDLICVDSVS 223

Query: 71  XXXPKGELDGEMGDAHMAMQARLMSQAXXXXXXXXXXXXXXXIFINQVRSKISTFGGFGG 130
              P+ E++GE+G   M +QARLMSQA               IF+NQ+R KI  +  +G 
Sbjct: 224 ALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVY--YGN 281

Query: 131 PTEVTCGGNALKFYASVRLNIKRIGFVK--KGEEIIGSQVVVKVVKNKLAPPFKTAE 185
           P EVT GG ALKF+ASVRL I+  G +K  KG+E IG +  V+V K+K++ P+K  E
Sbjct: 282 P-EVTSGGIALKFFASVRLEIRSAGKIKSSKGDEDIGLRARVRVQKSKVSRPYKQEE 337


>AT3G32920.2 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr3:13485399-13486713
           REVERSE LENGTH=195
          Length = 195

 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/76 (71%), Positives = 60/76 (78%)

Query: 22  LDRTLAESIGVNTNNLLLSQPDCGEQALSLVDTLIRSGXXXXXXXXXXXXXXPKGELDGE 81
           L R+LA++IGVNT NLLLSQPDCG+QALSLVDTLI+SG              PKGELDGE
Sbjct: 59  LIRSLAKAIGVNTENLLLSQPDCGKQALSLVDTLIQSGSVDVIVVDSVAALVPKGELDGE 118

Query: 82  MGDAHMAMQARLMSQA 97
           MGDAHMA+QARLMSQA
Sbjct: 119 MGDAHMAIQARLMSQA 134