Miyakogusa Predicted Gene
- Lj4g3v2172480.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2172480.1 Non Chatacterized Hit- tr|C5YA72|C5YA72_SORBI
Putative uncharacterized protein Sb06g019250
OS=Sorghu,58.11,2e-18,CRM,RNA-binding, CRM domain; no
description,RNA-binding, CRM domain; CRS1_YhbY,RNA-binding, CRM
doma,CUFF.50380.1
(592 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29750.1 | Symbols: | CRS1 / YhbY (CRM) domain-containing pr... 633 0.0
AT3G23070.1 | Symbols: ATCFM3A, CFM3A | CRM family member 3A | c... 508 e-144
AT4G14510.1 | Symbols: ATCFM3B, CFM3B | CRM family member 3B | c... 501 e-142
AT3G18390.1 | Symbols: EMB1865 | CRS1 / YhbY (CRM) domain-contai... 447 e-126
AT3G01370.1 | Symbols: ATCFM2, CFM2 | CRM family member 2 | chr3... 441 e-124
AT5G16180.1 | Symbols: CRS1, ATCRS1 | ortholog of maize chloropl... 330 2e-90
AT3G25440.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain p... 111 1e-24
AT3G25440.2 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain p... 111 1e-24
AT2G28480.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain p... 97 4e-20
AT4G13070.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain p... 85 1e-16
AT3G27550.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain p... 74 2e-13
>AT4G29750.1 | Symbols: | CRS1 / YhbY (CRM) domain-containing
protein | chr4:14569728-14572962 FORWARD LENGTH=841
Length = 841
Score = 633 bits (1633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/602 (55%), Positives = 435/602 (72%), Gaps = 30/602 (4%)
Query: 1 MMERFEVGVTGITQELVASIHQKWRDSEVVKLKFEAPLAANMKRAHQILESKTGGIVVWR 60
M+ER +VG GITQ LV +IH+KW EVVKLKF P + NMKR H++LE KTGG+V+WR
Sbjct: 259 MVERVKVGSAGITQALVEAIHEKWEVDEVVKLKFSEPYSLNMKRTHEVLEKKTGGLVIWR 318
Query: 61 SGSSIVLYRGMAYKLPCVKLYSKMYQAKEE-DVHQSVHVGSWSDAQLSVKEPVRTTTELL 119
SGSS+VLYRG++YKL CV+ + K + ++H+SV +
Sbjct: 319 SGSSVVLYRGISYKLKCVQTFIKQNNLEANPEIHRSVEARDY------------------ 360
Query: 120 TRDSAEYLKDMTEEEFMELTDLNQLLDELGPRFIDWTGRVPLPVDADLLAAVVPGYKPPF 179
++ Y K++ +E+ EL +LN LLDE+GPRF DWTG P PVDADLL V GY+ PF
Sbjct: 361 VQEDGNYPKNVPKEQLSELCELNDLLDEVGPRFHDWTGCAPFPVDADLLPGYVEGYRCPF 420
Query: 180 RLLPYGVKHCLTDREMTAFRRLARTTAPHFALGRNRELQGLARAMVKLWETSAIAKIVIK 239
R+LP GVK CL++ EMT RRLART+ PHFALGR+RELQGLA+AMVKLW SAIAKI IK
Sbjct: 421 RILPQGVKPCLSNTEMTEMRRLARTSPPHFALGRSRELQGLAKAMVKLWAKSAIAKIAIK 480
Query: 240 RGVPHTCNERMAEELRKLTGGTVLSRNKEFIVFYRGNDFLPPAVTNVLTERQK-LTLIQH 298
RGV +T NERMAEEL++LT G ++SRNKE+IVFYRGNDF+PPAV LTERQK +T +
Sbjct: 481 RGVENTRNERMAEELKRLTRGVLVSRNKEYIVFYRGNDFMPPAVAEALTERQKEITEVLQ 540
Query: 299 DEEEKAREIASS-ITIPDGKASP-MPLLAGTLAETRAATNNWGHQPSKQEVEKMTRDSAL 356
+E++ARE+AS+ T+ SP LLAGTLAET AA++ W S ++E++ R+SA
Sbjct: 541 AKEDQAREMASTRATLTSQAKSPKTQLLAGTLAETIAASSRWAPNASSVDIEELKRESAS 600
Query: 357 NRLSSIIKNHEIKLAMTKGKYRKADKDLAKLQGDLDPADLPSDLETLTNEERFLYRKMGL 416
+ +++I++ E++L K K R+A++DLAK+Q DLDP++LP+D E +T EER LYRK+GL
Sbjct: 601 IKRAALIRDLELRLLYGKQKLRRAERDLAKVQKDLDPSELPTDSEIITEEERLLYRKIGL 660
Query: 417 SMKPYLVLGRRDVYAGTIENMHLHWKYRELVKINVKGRNLAQVKQIAIALEAESGGVLVS 476
SM P+L+LGRR+VY GTIENMHLHWK+RELVK+ V+G++L QVK IAI+LEAESGGVLVS
Sbjct: 661 SMDPFLLLGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVS 720
Query: 477 VDKDTKGYIVIVYRGKNYFRPRVLRPKSLLTRRQALARSIVLQRREALKDHMLDLEELIG 536
VDK KGY +I+YRGKNY P LRP +LLTR++A ARSI LQRREALK H+ DLEE I
Sbjct: 721 VDKTMKGYAIILYRGKNYQMPFRLRPSNLLTRKKAFARSIELQRREALKYHVADLEERIE 780
Query: 537 LLKS-ELEDMKNEKEID-GDKTLYSSTQSYPVSSDD----EWEENEGSEIYFDKAESGDE 590
LLK+ + +DM+ + D ++ LY SSD+ EW E+E +E + +E +E
Sbjct: 781 LLKTGQDDDMETRNKSDEEEENLYLRVDESDFSSDEDESLEW-ESEKNETFLS-SEGKEE 838
Query: 591 DE 592
+E
Sbjct: 839 EE 840
>AT3G23070.1 | Symbols: ATCFM3A, CFM3A | CRM family member 3A |
chr3:8203548-8207243 FORWARD LENGTH=881
Length = 881
Score = 508 bits (1309), Expect = e-144, Method: Compositional matrix adjust.
Identities = 279/564 (49%), Positives = 383/564 (67%), Gaps = 31/564 (5%)
Query: 11 GITQELVASIHQKWRDSEVVKLKFEAPLAANMKRAHQILESKTGGIVVWRSGSSIVLYRG 70
G+TQ V +I +KW+ +E+V+LK E A NM++ H+ILE KTGG+V+WRSG+SI LYRG
Sbjct: 246 GVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIWRSGTSISLYRG 305
Query: 71 MAYKLPCVKLYSKMYQ-----AKEEDVHQSVHVGSWSDAQLSVKEPVRTTTELLTRDSAE 125
++Y+LP K + + A E+ ++ + SD ++ + + + TT +
Sbjct: 306 VSYELPSGKWNKQRREETPPEAVIENHDETTTMVDKSDEKVHLPQLEQETTSVEK----- 360
Query: 126 YLKDMTEEEFMELTDLNQLLDELGPRFIDWTGRVPLPVDADLLAAVVPGYKPPFRLLPYG 185
KD T +L++LLD+LGPRF+DW G PLPVDADLL +P Y+PPFR+LPYG
Sbjct: 361 --KDQTSPVVEYEDELDELLDDLGPRFMDWPGDNPLPVDADLLPGAIPDYEPPFRVLPYG 418
Query: 186 VKHCLTDREMTAFRRLARTTAPHFALGRNRELQGLARAMVKLWETSAIAKIVIKRGVPHT 245
V+ L +E TA RRLAR+ PHFALGR+R+LQGLA AMV+LWE S +AKI IKRGV T
Sbjct: 419 VRSSLGPKEATALRRLARSIPPHFALGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQST 478
Query: 246 CNERMAEELRKLTGGTVLSRNKEFIVFYRGNDFLPPAVTNVLTERQKLTLIQHDEEEKAR 305
+ERMAE+L+KLTGG +LSRNK+F+VFYRG +FL V + L E+++ DEEE+AR
Sbjct: 479 TSERMAEDLKKLTGGIMLSRNKDFLVFYRGKNFLSREVADALVEQERFVRTLQDEEEQAR 538
Query: 306 -EIASSITIPDGKASPMPLLAGTLAETRAATNNWGHQ--------PSKQEVEKMTRDSAL 356
+S++ +P + + + AGTL ET AT WG KQEVE +
Sbjct: 539 LRGSSALIVPSTEPANKLVSAGTLGETLDATGKWGKNLDDDDHSDEVKQEVEIL------ 592
Query: 357 NRLSSIIKNHEIKLAMTKGKYRKADKDLAKLQGDLDPADLPSDLETLTNEERFLYRKMGL 416
R ++++ E KLA + K KA++ LAK++ L PA+ D E++T+EERF++RK+GL
Sbjct: 593 -RHENLVRKLERKLAFAERKLLKAERGLAKVEVCLKPAEQREDPESITDEERFMFRKLGL 651
Query: 417 SMKPYLVLGRRDVYAGTIENMHLHWKYRELVKINVKGRNLAQVKQIAIALEAESGGVLVS 476
MK +L+LGRR V+ GT+ENMHLHWKYRELVKI VK + VK++A+ALEAESGG+LVS
Sbjct: 652 KMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAESGGILVS 711
Query: 477 VDKDTKGYIVIVYRGKNYFRPRVLRPKSLLTRRQALARSIVLQRREALKDHMLDLEELIG 536
+DK TKGY +IVYRG++Y RP +LRPK+LLT+R+ALARSI LQRRE L H+ ++
Sbjct: 712 IDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALARSIELQRREGLLKHISTMQAKAK 771
Query: 537 LLKSELEDMKNEKEID-GDKTLYS 559
L++E+E M EK D GD+ LY+
Sbjct: 772 QLRAEIEQM--EKVTDKGDEELYN 793
>AT4G14510.1 | Symbols: ATCFM3B, CFM3B | CRM family member 3B |
chr4:8337390-8341057 REVERSE LENGTH=907
Length = 907
Score = 501 bits (1289), Expect = e-142, Method: Compositional matrix adjust.
Identities = 276/595 (46%), Positives = 379/595 (63%), Gaps = 55/595 (9%)
Query: 4 RFEVGVTGITQELVASIHQKWRDSEVVKLKFEAPLAANMKRAHQILESKTGGIVVWRSGS 63
+ V G+TQ +V +I +KW+ SE+V+LK E A NM+R H+ILE KTGG+V+WRSG+
Sbjct: 240 KMRVTGAGVTQAVVDAIQEKWKGSEIVRLKIEGSSALNMRRMHEILERKTGGLVIWRSGT 299
Query: 64 SIVLY--RGMAYKLPCVKLYSKMYQAKE--------EDVHQSVHVGSWSDAQLSVKEPVR 113
SI LY +G + + + ++Y+ E V QSV + + + KEP
Sbjct: 300 SIALYNYKGGSNRDGSGNMNKQVYRRAERLPSSLPTSTVDQSVQLVNLPQLE---KEPTV 356
Query: 114 TTTELLTRDSAEYLKDMTEEEFMELTD-LNQLLDELGPRFIDWTGRVPLPVDADLLAAVV 172
KD T + +E D +N+LL+ LGPR+ DW G PLPVDADLL +V
Sbjct: 357 VGN-----------KDRTSPQEVEYEDEINELLEGLGPRYTDWQGGYPLPVDADLLPGIV 405
Query: 173 PGYKPPFRLLPYGVKHCLTDREMTAFRRLARTTAPHFALGRNRELQGLARAMVKLWETSA 232
PGY+PPFR LPYGV+ L +E T+ RR+A PHFALGR+R+LQGLA AMVKLW+ S
Sbjct: 406 PGYEPPFRALPYGVRSTLGTKEATSLRRIATVLPPHFALGRSRQLQGLATAMVKLWQKSL 465
Query: 233 IAKIVIKRGVPHTCNERMAEELRKLTGGTVLSRNKEFIVFYRGNDFLPPAVTNVLTERQK 292
IAK+ +KRGV T +ERMAE++++LTGG +LSRNK+F+VFYRG FL V L E++
Sbjct: 466 IAKVALKRGVQLTTSERMAEDIKRLTGGMLLSRNKDFLVFYRGKSFLSLEVGEALMEKEM 525
Query: 293 LTLIQHDEEEKAREIASS----------------------------ITIPDGKASPMPLL 324
L DEEE+AR ASS + +P KA+ +
Sbjct: 526 LVRTLQDEEEQARLRASSALVVPSIKANQQLARTLQDKEEQARPSALVLPSTKANQNLVS 585
Query: 325 AGTLAETRAATNNWGHQ-PSKQEVEKMTRDSALNRLSSIIKNHEIKLAMTKGKYRKADKD 383
AGTL ET AT WG + VE+M ++ R + +++ E KLA + K KA++
Sbjct: 586 AGTLGETLDATGKWGKNLDNDDHVEEMKQEVEKVRSAKLVRKLERKLAFAEKKLLKAERA 645
Query: 384 LAKLQGDLDPADLPSDLETLTNEERFLYRKMGLSMKPYLVLGRRDVYAGTIENMHLHWKY 443
LAK++ L PA+ +DLE +T EERF+++K+GL MK +L+LGRR V+ GT+ENMHLHWKY
Sbjct: 646 LAKVEESLKPAEQRTDLEGITEEERFMFQKLGLKMKAFLLLGRRGVFDGTVENMHLHWKY 705
Query: 444 RELVKINVKGRNLAQVKQIAIALEAESGGVLVSVDKDTKGYIVIVYRGKNYFRPRVLRPK 503
REL+KI VK + L +++A+ALEAESGG+LVSVDK +KGY VIVYRGK+Y RP LRPK
Sbjct: 706 RELIKILVKAKTLEGAQKVAMALEAESGGILVSVDKISKGYAVIVYRGKDYKRPTTLRPK 765
Query: 504 SLLTRRQALARSIVLQRREALKDHMLDLEELIGLLKSELEDMKNEKEIDGDKTLY 558
+LLT+R+ALARS+ LQ+REAL H+ ++ L++E+E ++ K+ GD+TLY
Sbjct: 766 NLLTKRKALARSLELQKREALIKHIEAIQTRSEQLRAEIEQVELVKD-KGDETLY 819
>AT3G18390.1 | Symbols: EMB1865 | CRS1 / YhbY (CRM)
domain-containing protein | chr3:6313572-6317584 FORWARD
LENGTH=848
Length = 848
Score = 447 bits (1151), Expect = e-126, Method: Compositional matrix adjust.
Identities = 247/547 (45%), Positives = 347/547 (63%), Gaps = 23/547 (4%)
Query: 4 RFEVGVTGITQELVASIHQKWRDSEVVKLKFEAPLAANMKRAHQILESKTGGIVVWRSGS 63
R + G+TQ ++ I+ WR E+V+LKF LA +MK AH+I+E +TGG+V+WR+GS
Sbjct: 261 RINIPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLARDMKTAHEIVERRTGGMVIWRAGS 320
Query: 64 SIVLYRGMAYKLPCVKLYSKMYQAKEE----DVH----QSVHVGSWSDAQLSVKEPVRTT 115
+V+YRG+ YK P V + ++M KE DV ++ + A L +K+P+
Sbjct: 321 VMVVYRGLDYKGPPV-ISNQMAGPKETLFVPDVSSAGDEATNAKDNQSAPLVIKDPIIKN 379
Query: 116 TELLTRDSAEYLKDMTEEEFMELTDLNQLLDELGPRFIDWTGRVPLPVDADLLAAVVPGY 175
R ++MTEEE + N LLD LGPRF +W G LPVDADLL +PGY
Sbjct: 380 P---IRK-----ENMTEEE----VEFNSLLDSLGPRFQEWWGTGVLPVDADLLPPTIPGY 427
Query: 176 KPPFRLLPYGVKHCLTDREMTAFRRLARTTAPHFALGRNRELQGLARAMVKLWETSAIAK 235
K PFRLLP G++ LT+ EMT R++ +T HFALGRNR QGLA A++++WE S IAK
Sbjct: 428 KTPFRLLPTGMRSNLTNAEMTNLRKIGKTLPCHFALGRNRNHQGLAAAILQIWEKSLIAK 487
Query: 236 IVIKRGVPHTCNERMAEELRKLTGGTVLSRNKEFIVFYRGNDFLPPAVTNVLTERQKLTL 295
I +KRG+ +T N+ MA+E++ LTGG +L RNK +IV YRG DFLP +V L ERQ+LT
Sbjct: 488 IAVKRGIQNTNNKLMADEVKTLTGGVLLLRNKYYIVIYRGKDFLPSSVAATLAERQELTK 547
Query: 296 IQHDEEEKAREIASSITIPDGKASPMPLLAGTLAETRAATNNWGHQPSKQEVEKMTRDSA 355
D EE+ R P G +P AGTLAE A WG + + EKM +++
Sbjct: 548 EIQDVEERVRNREIEAVQPVGDK--VPAEAGTLAEFYEAQARWGKEITPDHREKMIEEAS 605
Query: 356 LNRLSSIIKNHEIKLAMTKGKYRKADKDLAKLQGDLDPADLPSDLETLTNEERFLYRKMG 415
+ ++K + KL + + K+++A+K L+K++ + P D E ++ EER ++RK+G
Sbjct: 606 RVANARVVKRIQHKLNLAQSKFQRAEKLLSKIEASMIPNGPDYDQEVISEEERAMFRKVG 665
Query: 416 LSMKPYLVLGRRDVYAGTIENMHLHWKYRELVKINVKGRNLAQVKQIAIALEAESGGVLV 475
L MK YL +G R V+ G IENMHLHWK+RELVK+ K +N A V++ A LE ESGGVLV
Sbjct: 666 LKMKAYLPIGIRGVFDGVIENMHLHWKHRELVKLISKQKNQAFVEETARLLEYESGGVLV 725
Query: 476 SVDKDTKGYIVIVYRGKNYFRPRVLRPKSLLTRRQALARSIVLQRREALKDHMLDLEELI 535
+++K KG+ +I YRGKNY RP LRP++LLT+ +AL RSI +QR EAL H+ +LE I
Sbjct: 726 AIEKVPKGFALIYYRGKNYRRPISLRPRNLLTKAKALKRSIAMQRHEALSQHISELERTI 785
Query: 536 GLLKSEL 542
++S+L
Sbjct: 786 EQMQSQL 792
>AT3G01370.1 | Symbols: ATCFM2, CFM2 | CRM family member 2 |
chr3:139033-143477 FORWARD LENGTH=1011
Length = 1011
Score = 441 bits (1134), Expect = e-124, Method: Compositional matrix adjust.
Identities = 261/634 (41%), Positives = 365/634 (57%), Gaps = 86/634 (13%)
Query: 1 MMERFEVGVTGITQELVASIHQKWRDSEVVKLKFEAPLAANMKRAHQILESKTGGIVVWR 60
+ ++ ++G GIT+ +V IH++WR +EVVK+ E NMKR H +LE+KTGG+V+WR
Sbjct: 181 LTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLETKTGGLVIWR 240
Query: 61 SGSSIVLYRGMAYKLPCVKLYSKMYQAKEEDVHQSVHVGSWSDAQLSV----KEPVRTTT 116
SGS I+LYRG+ Y+ P Y + D+ G+ S Q V K+ + ++
Sbjct: 241 SGSKILLYRGVNYQYP--------YFVSDRDLAHEAASGASSMDQGVVDSREKQSIAESS 292
Query: 117 E----------LLTRD--SAEYLKDMTEEEFMELTDLNQLLDELGPRFIDWTGRVPLPVD 164
+LT+ S + ++ E + + ++LL+ LGPRF DW PLPVD
Sbjct: 293 APSITNKMVKPMLTQGVGSPDKVRFQLPGEVQLVEEADRLLEGLGPRFTDWWAYDPLPVD 352
Query: 165 ADLLAAVVPGYKPPFRLLPYGVKHCLTDREMTAFRRLARTTAPHFALGRNRELQGLARAM 224
DLL AVVP Y+ PFRLLPYGV LTD EMT RRL R HFALGRNR LQGLA A+
Sbjct: 353 GDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGLAVAI 412
Query: 225 VKLWETSAIAKIVIKRGVPHTCNERMAEELRKLTGGTVLSRNKEFIVFYRGNDFLPPAVT 284
VKLWE +AKI +KRGV +T +E MAEEL+ LTGGT++SR+K+FIV YRG DFLP AV+
Sbjct: 413 VKLWEKCELAKIAVKRGVQNTNSELMAEELKWLTGGTLISRDKDFIVLYRGKDFLPSAVS 472
Query: 285 NVLTERQKLTLI------------QHDEEEKAREIASSITIPDGKASPMPLLAGTLAETR 332
+ + ER++ T+I +++EE K R + I +
Sbjct: 473 SAIEERRRQTMIMENSSVHGNKLTENEEEIKPRAVKEDIEL------------------- 513
Query: 333 AATNNWGHQPSKQEVEKMTRDSALNRLSSIIKNHEIKLAMTKGKYRKADKDLAKLQGDLD 392
A + H + Q + N +I++ +KL+M K A+K LA L+
Sbjct: 514 EAKDQKDHIQTHQ-----MKSRQRNSPEAILEKTSMKLSMALEKKANAEKVLADLENRES 568
Query: 393 PADLPSDLETLTNEERFLYRKMGLSMKPYLVLGRRDVYAGTIENMHLHWKYRELVKINVK 452
P D E +TN+E+++ RK+GL MKP+L+LGRR V+ GTIENMHLHWKYRELVKI
Sbjct: 569 PQLSDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICN 628
Query: 453 GRNLAQVKQIAIALEAESGGVLVSVDKDTKGYIVIVYRGKNYFRPRVLRPKSLLTRRQAL 512
++ ++A LEAESGG+LV+V+ +KGY +IVYRGKNY RP+ LRP++LL++R+AL
Sbjct: 629 EYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQCLRPQTLLSKREAL 688
Query: 513 ARSIVLQRREALKDHMLDLEELIGLLKSEL--EDMKNEKEIDGDKTL------------- 557
RS+ QRR++LK H+L L I L +L + NE DG+ +
Sbjct: 689 KRSVEAQRRKSLKLHVLKLSNNIEELNRQLVEDSATNETWSDGESSNMMVEEETENQHTE 748
Query: 558 -----------YSSTQSYPVSSDDEWEENEGSEI 580
YSS S P S ++ WE++ E+
Sbjct: 749 PEKAREKIELGYSSDLSVPSSGEENWEDDSEGEV 782
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 403 LTNEERFLYRKMGLSMK--PYLVLGRRDVYAGTIENMHLHWKYRELVKINVKGR-NLAQV 459
L+N ER + RK L MK P +GR +V G + +H++ L +NVKGR N V
Sbjct: 875 LSNRERLILRKQALKMKKRPPFAVGRSNVVTGLARTLKMHFQKNPLAIVNVKGRANGTSV 934
Query: 460 KQIAIALEAESGGVLVSVDKDTKGYIVIVYRG 491
+++ L+ E+G +LVS + VI+YRG
Sbjct: 935 QEVIAKLKEETGALLVSQEPSK----VILYRG 962
>AT5G16180.1 | Symbols: CRS1, ATCRS1 | ortholog of maize chloroplast
splicing factor CRS1 | chr5:5279884-5282898 FORWARD
LENGTH=720
Length = 720
Score = 330 bits (846), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 208/542 (38%), Positives = 297/542 (54%), Gaps = 59/542 (10%)
Query: 10 TGITQELVASIHQKWRDSEVVKLKFEAPLAANMKRAHQILESKTGGIVVWRSGSSIVLYR 69
G+T+ +V I W+ +E+ ++F+ PL NM+RA +I+E KTGG+VV +V+YR
Sbjct: 231 AGVTELVVNKIKSMWKLNELAMVRFDVPLCRNMERAQEIIEMKTGGLVVLSKKEFLVVYR 290
Query: 70 GMAYKLPCVKLYSKMYQAKEEDVHQSVHVGSWSDAQLSVKEPVRTTTELLTRDSAEYLKD 129
G Y ++ +D ++ L R++
Sbjct: 291 G-----------GPSYSSEGQD---------------------EISSSLYEREA------ 312
Query: 130 MTEEEFMELTDLNQLLDELGPRFIDWTGRVPLPVDADLLAAVVPGYKPPFRLLPYGVKHC 189
++LLD LGPR++DW R P PVDADLL VV GY P R P +
Sbjct: 313 ------------DRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAK 360
Query: 190 LTDREMTAFRRLARTTAPHFALGRNRELQGLARAMVKLWETSAIAKIVIKRGVPHTCNER 249
LTD E+T R +A+ HF LGRN LQGLA A+VKLWE IAKI IK G +T NE
Sbjct: 361 LTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEE 420
Query: 250 MAEELRKLTGGTVLSRNKEFIVFYRGNDFLPPAVTNVLTERQK-LTLIQHDEEEK-AREI 307
MA+ELR LTGG ++ RNK IV YRG DFL V +++ +R++ L+ QH EE K +I
Sbjct: 421 MADELRYLTGGVLILRNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEETKRESDI 480
Query: 308 ASSITIPDGKASPMPLLAGTLAETRAATNNWGHQ-PSKQEVEKMTRDSALNRLSSIIKNH 366
+ +GK +GTL E + +G P E E + RL +K+
Sbjct: 481 ELLEVVTNGKQLKETNKSGTLLEFQELQRKFGEMDPRNLETE-----AEKARLEKELKSQ 535
Query: 367 EIKLAMTKGKYRKADKDLAKLQGDLDPADLPSDLETLTNEERFLYRKMGLSMKPYLVLGR 426
E KL++ K K K++ +L KL P++ D+E LTNEER R++GL M LVLGR
Sbjct: 536 EHKLSILKSKIEKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGR 595
Query: 427 RDVYAGTIENMHLHWKYRELVKINVKGRNLAQVKQIAIALEAESGGVLVSVDKDTKGYIV 486
R V+ G +E +H HWK+RE+ K+ + ++V A ALE ES GVL+S++K +G+ +
Sbjct: 596 RGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLISIEKLKEGHAI 655
Query: 487 IVYRGKNYFRPRV-LRPKSLLTRRQALARSIVLQRREALKDHMLDLEELIGLLKSELEDM 545
++YRGKNY RP L ++LLT+R+AL RS+V+QR +LK E I LK L ++
Sbjct: 656 LIYRGKNYKRPSSKLMAQNLLTKRKALQRSVVMQRLGSLKFFAYQRERAIEDLKVSLVNL 715
Query: 546 KN 547
++
Sbjct: 716 QD 717
>AT3G25440.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr3:9223998-9225505 FORWARD LENGTH=444
Length = 444
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 119/217 (54%), Gaps = 24/217 (11%)
Query: 344 KQEVEKMT-RDSALNRLSSIIKNHEIKLAMTKGKYRKADKDLAKLQGDLDP---ADLPSD 399
K+E E+MT + LN+L K RK ++ L + L+P A+ D
Sbjct: 129 KKEFERMTSEEKILNKLR---------------KARKKEERLMETMKKLEPSESAETTHD 173
Query: 400 LETLTNEERFLYRKMGLSMKPYLVLGRRDVYAGTIENMHLHWKYRELVKINVKGRNLAQV 459
E LT EE F Y KMGL K Y+ +GRR +Y G I NMHLHWK + +++ +K +V
Sbjct: 174 PEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEV 233
Query: 460 KQIAIALEAESGGVLVSVDKDTKGYIVIVYRGKNYFRP--RVLRPKSLLTRRQALARSIV 517
K+IA+ L +GG+++ V +G +I+YRGKNY +P ++ P+ L R++AL +S
Sbjct: 234 KEIAVELARLTGGIVLDVH---EGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKC 290
Query: 518 LQRREALKDHMLDLEELIGLLKSELEDMKNEKEIDGD 554
A++ ++ LE+ + LL+++ E ++ + D
Sbjct: 291 RDALRAVRKYIPRLEQELQLLQAQAETKRDYTNVKVD 327
>AT3G25440.2 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr3:9224294-9225505 FORWARD LENGTH=380
Length = 380
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 115/206 (55%), Gaps = 24/206 (11%)
Query: 344 KQEVEKMTRDSA-LNRLSSIIKNHEIKLAMTKGKYRKADKDLAKLQGDLDP---ADLPSD 399
K+E E+MT + LN+L K RK ++ L + L+P A+ D
Sbjct: 65 KKEFERMTSEEKILNKLR---------------KARKKEERLMETMKKLEPSESAETTHD 109
Query: 400 LETLTNEERFLYRKMGLSMKPYLVLGRRDVYAGTIENMHLHWKYRELVKINVKGRNLAQV 459
E LT EE F Y KMGL K Y+ +GRR +Y G I NMHLHWK + +++ +K +V
Sbjct: 110 PEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEV 169
Query: 460 KQIAIALEAESGGVLVSVDKDTKGYIVIVYRGKNYFRP--RVLRPKSLLTRRQALARSIV 517
K+IA+ L +GG+++ V +G +I+YRGKNY +P ++ P+ L R++AL +S
Sbjct: 170 KEIAVELARLTGGIVLDV---HEGNTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKC 226
Query: 518 LQRREALKDHMLDLEELIGLLKSELE 543
A++ ++ LE+ + LL+++ E
Sbjct: 227 RDALRAVRKYIPRLEQELQLLQAQAE 252
>AT2G28480.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr2:12176642-12178031 REVERSE LENGTH=372
Length = 372
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 85/151 (56%), Gaps = 10/151 (6%)
Query: 383 DLAKLQGDLDPADLPSDLETLTNEERFLYRKMGLSMKPYLVLGRRDVYAGTIENMHLHWK 442
++AK+QG P P ++ T EERF +KMG Y+ +GRR V+ G I NMHLHWK
Sbjct: 150 EVAKVQG---PEVRPHEI---TGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWK 203
Query: 443 YRELVKINVKGRNLAQVKQIAIALEAESGGVLVSVDKDTKGYIVIVYRGKNYFRPRVLRP 502
E VK+ QV+Q A L SGGV V++ D +I YRGK Y +P+V+ P
Sbjct: 204 KHETVKVICNNSKPGQVQQYAEELAKLSGGVPVNIIGDD---TIIFYRGKGYVQPQVMSP 260
Query: 503 KSLLTRRQALARSIVLQRREALKDHMLDLEE 533
L++++A +S Q E+++ H + + E
Sbjct: 261 IDTLSKKRAYEKSKYEQSLESVR-HFIAIAE 290
>AT4G13070.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr4:7621780-7623051 REVERSE LENGTH=343
Length = 343
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 73/124 (58%), Gaps = 5/124 (4%)
Query: 392 DPADLPSDLETLTNEERFLYRKMGLSMKPYLVLGRRDVYAGTIENMHLHWKYRELVKINV 451
PA+ P D E+LT EE+ ++ G K ++++GRR V+ G + N+HLHWK E VK+
Sbjct: 172 SPAE-PYDPESLTEEEQHYLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKVIC 230
Query: 452 KGRNL-AQVKQIAIALEAESGGVLVSVDKDTKGYIVIVYRGKNYFRPRVLRPKSLLTRRQ 510
K N QV + A L S G+++ V + +++YRGKNY RP V+ P L++ +
Sbjct: 231 KPCNKPGQVHEYAEELARLSKGIVIDVKPNN---TIVLYRGKNYVRPEVMSPVDTLSKDK 287
Query: 511 ALAR 514
AL +
Sbjct: 288 ALEK 291
>AT3G27550.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr3:10208010-10209899 REVERSE LENGTH=491
Length = 491
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 96/173 (55%), Gaps = 9/173 (5%)
Query: 378 RKADKDLAKLQGDLDPADLPS------DLETLTNEERFLYRKMGLSMKPYLVLGRRDVYA 431
++A K +A L L DLP D E T+E+ ++K+G K Y+ +G R V+
Sbjct: 61 KRAKKKVALLLQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVPVGVRGVFG 120
Query: 432 GTIENMHLHWKYRELVKINVKGRNLAQVKQIAIALEAESGGVLVSVDKDTKGYIVIVYRG 491
G ++NMH+HWK+ E V++ ++K++A + SGGV++++ +I++RG
Sbjct: 121 GVVQNMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINI---HNVKTIIMFRG 177
Query: 492 KNYFRPRVLRPKSLLTRRQALARSIVLQRREALKDHMLDLEELIGLLKSELED 544
+NY +P+ L P + LT+R+AL ++ Q E+ K ++ E+ + + ED
Sbjct: 178 RNYRQPKNLIPVNTLTKRKALFKARFEQALESQKLNIKKTEQQLRRMGVNPED 230