Miyakogusa Predicted Gene

Lj4g3v2141370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2141370.1 Non Chatacterized Hit- tr|K4DBX4|K4DBX4_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,84.93,3e-19,seg,NULL; UPF0197,Uncharacterised protein family
UPF0197; UNCHARACTERIZED,Uncharacterised protein fa,CUFF.50381.1
         (76 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29735.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    87   3e-18
AT4G29735.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    73   3e-14

>AT4G29735.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: endomembrane
          system; EXPRESSED IN: 23 plant structures; EXPRESSED
          DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
          Uncharacterised protein family UPF0197
          (InterPro:IPR007915); Has 30201 Blast hits to 17322
          proteins in 780 species: Archae - 12; Bacteria - 1396;
          Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
          0; Other Eukaryotes - 2996 (source: NCBI BLink). |
          chr4:14562962-14564277 REVERSE LENGTH=76
          Length = 76

 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/56 (76%), Positives = 47/56 (83%)

Query: 1  MAPKPITSPVPDAWYPTLSVFTLAIGLVLTASFFIYEATSSRKTRSLAQELTTGAV 56
          MA KPI SP+P A YPTLSVFTLAIGLV+TA FFIYEATSSRK RS+ +EL T AV
Sbjct: 1  MAAKPIASPIPVALYPTLSVFTLAIGLVITAIFFIYEATSSRKNRSVGKELATSAV 56


>AT4G29735.2 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: endomembrane
          system; EXPRESSED IN: 23 plant structures; EXPRESSED
          DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
          Uncharacterised protein family UPF0197
          (InterPro:IPR007915); Has 190 Blast hits to 190
          proteins in 72 species: Archae - 0; Bacteria - 0;
          Metazoa - 133; Fungi - 0; Plants - 48; Viruses - 0;
          Other Eukaryotes - 9 (source: NCBI BLink). |
          chr4:14562962-14564277 REVERSE LENGTH=98
          Length = 98

 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 47/78 (60%), Gaps = 22/78 (28%)

Query: 1  MAPKPITSPVPDAWYPTLSVFTLAIGLVLTASFF----------------------IYEA 38
          MA KPI SP+P A YPTLSVFTLAIGLV+TA FF                      IYEA
Sbjct: 1  MAAKPIASPIPVALYPTLSVFTLAIGLVITAIFFIVEHLPFKGWQVLGDMIRFVKVIYEA 60

Query: 39 TSSRKTRSLAQELTTGAV 56
          TSSRK RS+ +EL T AV
Sbjct: 61 TSSRKNRSVGKELATSAV 78