Miyakogusa Predicted Gene

Lj4g3v2140140.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2140140.1 tr|Q6YZF6|Q6YZF6_ORYSJ Os08g0535050 protein
OS=Oryza sativa subsp. japonica GN=P0702C09.24 PE=4
SV=1,52.21,4e-18,seg,NULL; coiled-coil,NULL; Use1,Vesicle transport
protein, Use1; SUBFAMILY NOT NAMED,NULL; FAMILY N,CUFF.50355.1
         (238 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G55600.1 | Symbols:  | Membrane fusion protein Use1 | chr3:20...   268   2e-72
AT1G54110.1 | Symbols:  | Membrane fusion protein Use1 | chr1:20...   246   1e-65

>AT3G55600.1 | Symbols:  | Membrane fusion protein Use1 |
           chr3:20620682-20622341 FORWARD LENGTH=240
          Length = 240

 Score =  268 bits (686), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 144/240 (60%), Positives = 174/240 (72%), Gaps = 3/240 (1%)

Query: 1   MGISKTEVNLKRLLXXXXXXXXXXKLVHYVATLREQLEQLAEEKTPEGLPRISKAILNDY 60
           MGISKTE+NL+RLL          KL+HYVATLREQLEQL+EEKTPEGLPR++KA +N+Y
Sbjct: 2   MGISKTEINLRRLLSAAPNQQNQSKLMHYVATLREQLEQLSEEKTPEGLPRVTKAKVNEY 61

Query: 61  SEKIEAIACKLVNSEPDIQVPEE--SERNLVKENPSDIELKRQISLSGLRRRPVPASSTE 118
            EKIEA+A K+ + EP+ +V +E  ++ +    +P   +  R  +   LRRR VPASS E
Sbjct: 62  YEKIEAVASKIASQEPETEVSDEPFAKDSTSGSSPKIEDEPRSPTSPQLRRRIVPASSKE 121

Query: 119 DRAHEPAETDHLSPVKLDTAAHAHIDKHRKLQEDLTDEMVVLAKQLKESSLMMSQSVQNT 178
            ++ + A+ D   P+KLDTAA AHIDKHRKLQEDLTDEMVVLA+QLKE S  +SQSVQNT
Sbjct: 122 -QSFDAADADSSKPIKLDTAAQAHIDKHRKLQEDLTDEMVVLARQLKERSQAISQSVQNT 180

Query: 179 EKILDSTEKAIEHSLASTGRANVRATAIYSESSKTSCLTWLXXXXXXXXXXXXILLIRVT 238
           EKILDSTE+AIE SLASTG A  RAT IYS+SSKTSC  WL            +LLIRVT
Sbjct: 181 EKILDSTEEAIEQSLASTGHATTRATKIYSQSSKTSCFQWLLIFAMICVFIMVVLLIRVT 240


>AT1G54110.1 | Symbols:  | Membrane fusion protein Use1 |
           chr1:20199909-20201623 FORWARD LENGTH=236
          Length = 236

 Score =  246 bits (628), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 137/243 (56%), Positives = 164/243 (67%), Gaps = 12/243 (4%)

Query: 1   MGISKTEVNLKRLLXXXXXXXXXXKLVHYVATLREQLEQLAEEKTPEGLPRISKAILNDY 60
           MGI KTE+N  RLL          KL+HYVATLREQLEQL+EEKT EGLPR++ A +N+Y
Sbjct: 1   MGIGKTEINFMRLLSAAPNQQNQSKLMHYVATLREQLEQLSEEKTLEGLPRVTNAKVNEY 60

Query: 61  SEKIEAIACKLVNSEPDIQVPEESERNLVKENPSDIELK-----RQISLSGLRRRPVPAS 115
            EKIEA+  ++V   P  +V +E+     K++ +D   K     R  +   LRRR VPAS
Sbjct: 61  YEKIEAVVSRIVAQVPHTEVSDEA---FAKDSTNDSSPKVEDDTRTPNSPQLRRRIVPAS 117

Query: 116 STEDRAHEPAETDHLSPVKLDTAAHAHIDKHRKLQEDLTDEMVVLAKQLKESSLMMSQSV 175
           S E    +  + D   P+KLDTAA A ++K RKLQEDLTDEMVVLA+QLKE S M+SQSV
Sbjct: 118 SKE----QSYDADPSKPIKLDTAAQAQVNKQRKLQEDLTDEMVVLARQLKERSQMISQSV 173

Query: 176 QNTEKILDSTEKAIEHSLASTGRANVRATAIYSESSKTSCLTWLXXXXXXXXXXXXILLI 235
           QNTEKILDSTE+AIE SLASTG A VRAT IYSESSKTSC  WL            ++LI
Sbjct: 174 QNTEKILDSTEEAIEQSLASTGHATVRATKIYSESSKTSCFQWLLILAMTCVFIMVVMLI 233

Query: 236 RVT 238
           RVT
Sbjct: 234 RVT 236