Miyakogusa Predicted Gene

Lj4g3v2139450.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2139450.1 Non Chatacterized Hit- tr|C5Y671|C5Y671_SORBI
Putative uncharacterized protein Sb05g005320
OS=Sorghu,48.45,1e-18,UNCHARACTERIZED,NULL,TC61448.path2.1
         (200 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G28430.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   226   7e-60

>AT3G28430.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: mitochondrion;
           EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6
           growth stages; CONTAINS InterPro DOMAIN/s: Protein of
           unknown function FPL (InterPro:IPR019155); Has 243 Blast
           hits to 233 proteins in 101 species: Archae - 0;
           Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 53;
           Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
           | chr3:10657441-10662404 REVERSE LENGTH=837
          Length = 837

 Score =  226 bits (577), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 106/184 (57%), Positives = 131/184 (71%)

Query: 15  CIRQAKRKVIDALANLFCRSNVSAATLWDGGWLVRQLFPYSESEFNSHHLQLLKVSYKNC 74
           C R  + +V+D L  L CR N+SA TLWDGGWL+RQL PYSE+EFN  HL++L VSY+ C
Sbjct: 511 CPRVHRHQVVDTLVTLLCRENISAETLWDGGWLLRQLLPYSEAEFNRKHLKMLNVSYEKC 570

Query: 75  SSALVEEVNGIWPDFLIPVLCDEWRKCKRAMESSSPRKEPDCMLGLQRKFSSEDSIPHRS 134
            ++L  E+ GIWPD LI VL DEWRKCKR +E+ SP+KEP  +L    + SS D+    S
Sbjct: 571 KNSLTREIKGIWPDLLIRVLLDEWRKCKRVIEAPSPQKEPKSVLLQLDRSSSNDNSVSES 630

Query: 135 SLAAGERMHELVKVFVLQHQLQLFTLGRALPEQPPINPPGDLPTNCRAHTSGIAASGPKA 194
           S  AGERM E+VKVFVL HQLQ+F+LGR+LPEQPPI PP D     RA  +G+  S PK 
Sbjct: 631 SFTAGERMCEVVKVFVLLHQLQIFSLGRSLPEQPPIYPPADRSETSRATRAGLDVSVPKP 690

Query: 195 GTEV 198
           GTE+
Sbjct: 691 GTEL 694