Miyakogusa Predicted Gene
- Lj4g3v2139210.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2139210.1 tr|D7KH33|D7KH33_ARALL Predicted protein
OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_678374
PE,31.44,0.000000000000002,GRAS,Transcription factor GRAS; FAMILY NOT
NAMED,NULL,gene.g56219.t1.1
(143 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G37650.1 | Symbols: | GRAS family transcription factor | chr... 138 1e-33
AT1G07530.1 | Symbols: SCL14, ATGRAS2, GRAS2 | SCARECROW-like 14... 128 1e-30
AT2G29060.1 | Symbols: | GRAS family transcription factor | chr... 113 4e-26
AT5G59450.1 | Symbols: | GRAS family transcription factor | chr... 97 5e-21
AT1G07520.1 | Symbols: | GRAS family transcription factor | chr... 87 4e-18
AT3G46600.3 | Symbols: | GRAS family transcription factor | chr... 85 1e-17
AT3G46600.2 | Symbols: | GRAS family transcription factor | chr... 85 1e-17
AT3G46600.1 | Symbols: | GRAS family transcription factor | chr... 85 1e-17
AT2G29065.1 | Symbols: | GRAS family transcription factor | chr... 74 2e-14
AT5G48150.2 | Symbols: PAT1 | GRAS family transcription factor |... 50 4e-07
AT5G48150.1 | Symbols: PAT1 | GRAS family transcription factor |... 50 4e-07
>AT2G37650.1 | Symbols: | GRAS family transcription factor |
chr2:15792623-15794779 FORWARD LENGTH=718
Length = 718
Score = 138 bits (347), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 101/188 (53%), Gaps = 45/188 (23%)
Query: 1 MIDLRSLLVLCELAVAADDYRNAHELLKKIRHHLNAFADGNQRLAHIFADGLEGQLAGPG 60
++DLRSLL+ C AVAADD R A +LLK+IR H F DGNQRLAH FA+GLE +LAG G
Sbjct: 341 VVDLRSLLIHCAQAVAADDRRCAGQLLKQIRLHSTPFGDGNQRLAHCFANGLEARLAGTG 400
Query: 61 SQICKGIVSKRTLAADILKAYNLFLPA--------------------------------- 87
SQI KGIVSK AA +LKA+ LFL
Sbjct: 401 SQIYKGIVSKPRSAAAVLKAHQLFLACCPFRKLSYFITNKTIRDLVGNSQRVHVIDFGIL 460
Query: 88 ------------KTGGPPKLQITGIDFPQPGFMSAQRVILTVHFPVFYAEAYYVSFEYNA 135
G PK++ITGI+FPQPGF AQRV T YA+ + V FEY A
Sbjct: 461 YGFQWPTLIHRFSMYGSPKVRITGIEFPQPGFRPAQRVEETGQRLAAYAKLFGVPFEYKA 520
Query: 136 IAKKQETV 143
IAKK + +
Sbjct: 521 IAKKWDAI 528
>AT1G07530.1 | Symbols: SCL14, ATGRAS2, GRAS2 | SCARECROW-like 14 |
chr1:2313828-2316137 REVERSE LENGTH=769
Length = 769
Score = 128 bits (321), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 100/189 (52%), Gaps = 48/189 (25%)
Query: 3 DLRSLLVLCELAVAADDYRNAHELLKKIRHHLNAFADGNQRLAHIFADGLEGQLAGPGSQ 62
DLR+LLVLC AV+ DD R A+E+L++IR H + +G++RLAH FA+ LE +LAG G+Q
Sbjct: 392 DLRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQ 451
Query: 63 ICKGIVSKRTLAADILKAYNLFLP------------------------------------ 86
I + SK+T AAD+LKAY ++
Sbjct: 452 IYTALSSKKTSAADMLKAYQTYMSVCPFKKAAIIFANHSMMRFTANANTIHIIDFGISYG 511
Query: 87 ------------AKTGGPPKLQITGIDFPQPGFMSAQRVILTVHFPVFYAEAYYVSFEYN 134
++ GG PKL+ITGI+ PQ GF A+ V T H Y + + V FEYN
Sbjct: 512 FQWPALIHRLSLSRPGGSPKLRITGIELPQRGFRPAEGVQETGHRLARYCQRHNVPFEYN 571
Query: 135 AIAKKQETV 143
AIA+K ET+
Sbjct: 572 AIAQKWETI 580
>AT2G29060.1 | Symbols: | GRAS family transcription factor |
chr2:12481991-12484075 FORWARD LENGTH=694
Length = 694
Score = 113 bits (283), Expect = 4e-26, Method: Composition-based stats.
Identities = 68/190 (35%), Positives = 96/190 (50%), Gaps = 49/190 (25%)
Query: 3 DLRSLLVLCELAVAADDYRNAHELLKKIRHHLNAFADGNQRLAHIFADGLEGQLAGPGSQ 62
DLR++LV C AV+ +D R A ELL +IR H +++ DG +RLAH FA+ LE +LAG G+Q
Sbjct: 317 DLRTMLVSCAQAVSINDRRTADELLSRIRQHSSSYGDGTERLAHYFANSLEARLAGIGTQ 376
Query: 63 ICKGIVSKRTLAADILKAYNLFLP------------------------AKT--------- 89
+ + SK+T +D+LKAY ++ AKT
Sbjct: 377 VYTALSSKKTSTSDMLKAYQTYISVCPFKKIAIIFANHSIMRLASSANAKTIHIIDFGIS 436
Query: 90 ----------------GGPPKLQITGIDFPQPGFMSAQRVILTVHFPVFYAEAYYVSFEY 133
G KL+ITGI+ PQ GF A+ VI T Y + + + FEY
Sbjct: 437 DGFQWPSLIHRLAWRRGSSCKLRITGIELPQRGFRPAEGVIETGRRLAKYCQKFNIPFEY 496
Query: 134 NAIAKKQETV 143
NAIA+K E++
Sbjct: 497 NAIAQKWESI 506
>AT5G59450.1 | Symbols: | GRAS family transcription factor |
chr5:23974808-23976640 FORWARD LENGTH=610
Length = 610
Score = 96.7 bits (239), Expect = 5e-21, Method: Composition-based stats.
Identities = 66/190 (34%), Positives = 86/190 (45%), Gaps = 48/190 (25%)
Query: 2 IDLRSLLVLCELAVAADDYRNAHELLKKIRHHLNAFADGNQRLAHIFADGLEGQLAGPGS 61
+DLRSLL C AVA+ D R A + LK+IR H ++ DG QRLA FA+ LE ++ G S
Sbjct: 222 VDLRSLLTQCAQAVASFDQRRATDKLKEIRAHSSSNGDGTQRLAFYFAEALEARITGNIS 281
Query: 62 -QICKGIVSKRTLAADILKAYNLF------------------------------------ 84
+ S T DILKAY LF
Sbjct: 282 PPVSNPFPSSTTSMVDILKAYKLFVHTCPIYVTDYFAANKSIYELAMKATKLHIVDFGVL 341
Query: 85 -----------LPAKTGGPPKLQITGIDFPQPGFMSAQRVILTVHFPVFYAEAYYVSFEY 133
L + GGPP L++TGI+ PQ GF + RV T + + + V FE+
Sbjct: 342 YGFQWPCLLRALSKRPGGPPMLRVTGIELPQAGFRPSDRVEETGRRLKRFCDQFNVPFEF 401
Query: 134 NAIAKKQETV 143
N IAKK ET+
Sbjct: 402 NFIAKKWETI 411
>AT1G07520.1 | Symbols: | GRAS family transcription factor |
chr1:2309718-2311805 REVERSE LENGTH=695
Length = 695
Score = 87.0 bits (214), Expect = 4e-18, Method: Composition-based stats.
Identities = 62/194 (31%), Positives = 86/194 (44%), Gaps = 52/194 (26%)
Query: 2 IDLRSLLVLCELAVAADDYRNAHELLKKIRHHLNAFADGNQRLAHIFADGLEGQLAGPGS 61
+D R+LL LC +V+A D A +LL++IR + D +QRLAH FA+ LE +L G
Sbjct: 313 VDFRTLLTLCAQSVSAGDKITADDLLRQIRKQCSPVGDASQRLAHFFANALEARLEGSTG 372
Query: 62 QICK----GIVSKRTLAADILKAYNLFLPA------------------------------ 87
+ + I SK+ AA ILK+Y++FL A
Sbjct: 373 TMIQSYYDSISSKKRTAAQILKSYSVFLSASPFMTLIYFFSNKMILDAAKDASVLHIVDF 432
Query: 88 -----------------KTGGPPKLQITGIDFPQPGFMSAQRVILTVHFPVFYAEAYYVS 130
G KL+ITGI+ PQ G +R+ T Y + + V
Sbjct: 433 GILYGFQWPMFIQHLSKSNPGLRKLRITGIEIPQHGLRPTERIQDTGRRLTEYCKRFGVP 492
Query: 131 FEYNAIAKKQ-ETV 143
FEYNAIA K ET+
Sbjct: 493 FEYNAIASKNWETI 506
>AT3G46600.3 | Symbols: | GRAS family transcription factor |
chr3:17158052-17159799 FORWARD LENGTH=551
Length = 551
Score = 85.1 bits (209), Expect = 1e-17, Method: Composition-based stats.
Identities = 59/189 (31%), Positives = 83/189 (43%), Gaps = 48/189 (25%)
Query: 2 IDLRSLLVLCELAVAADDYRNAHELLKKIRHHLNAFADGNQRLAHIFADGLEGQLAGPGS 61
+D+R+LL+ C AVA+ D R A E LK+IR H + D QRL + FA+ LE ++ G +
Sbjct: 175 VDMRNLLMQCAQAVASFDQRRAFEKLKEIREHSSRHGDATQRLGYHFAEALEARITGTMT 234
Query: 62 QICKGIVSKRTLAADILKAYNLFLPA---------------------------------- 87
S RT DILKAY F+ A
Sbjct: 235 TPISA-TSSRTSMVDILKAYKGFVQACPTLIMCYFTANRTINELASKATTLHIIDFGILY 293
Query: 88 -------------KTGGPPKLQITGIDFPQPGFMSAQRVILTVHFPVFYAEAYYVSFEYN 134
+ GPP L++TGI+ PQ GF ++RV T + + + V FEY+
Sbjct: 294 GFQWPCLIQALSKRDIGPPLLRVTGIELPQSGFRPSERVEETGRRLKRFCDKFNVPFEYS 353
Query: 135 AIAKKQETV 143
IAK E +
Sbjct: 354 FIAKNWENI 362
>AT3G46600.2 | Symbols: | GRAS family transcription factor |
chr3:17158379-17159799 FORWARD LENGTH=453
Length = 453
Score = 85.1 bits (209), Expect = 1e-17, Method: Composition-based stats.
Identities = 59/189 (31%), Positives = 83/189 (43%), Gaps = 48/189 (25%)
Query: 2 IDLRSLLVLCELAVAADDYRNAHELLKKIRHHLNAFADGNQRLAHIFADGLEGQLAGPGS 61
+D+R+LL+ C AVA+ D R A E LK+IR H + D QRL + FA+ LE ++ G +
Sbjct: 77 VDMRNLLMQCAQAVASFDQRRAFEKLKEIREHSSRHGDATQRLGYHFAEALEARITGTMT 136
Query: 62 QICKGIVSKRTLAADILKAYNLFLPA---------------------------------- 87
S RT DILKAY F+ A
Sbjct: 137 TPISA-TSSRTSMVDILKAYKGFVQACPTLIMCYFTANRTINELASKATTLHIIDFGILY 195
Query: 88 -------------KTGGPPKLQITGIDFPQPGFMSAQRVILTVHFPVFYAEAYYVSFEYN 134
+ GPP L++TGI+ PQ GF ++RV T + + + V FEY+
Sbjct: 196 GFQWPCLIQALSKRDIGPPLLRVTGIELPQSGFRPSERVEETGRRLKRFCDKFNVPFEYS 255
Query: 135 AIAKKQETV 143
IAK E +
Sbjct: 256 FIAKNWENI 264
>AT3G46600.1 | Symbols: | GRAS family transcription factor |
chr3:17158048-17159799 FORWARD LENGTH=583
Length = 583
Score = 85.1 bits (209), Expect = 1e-17, Method: Composition-based stats.
Identities = 59/189 (31%), Positives = 83/189 (43%), Gaps = 48/189 (25%)
Query: 2 IDLRSLLVLCELAVAADDYRNAHELLKKIRHHLNAFADGNQRLAHIFADGLEGQLAGPGS 61
+D+R+LL+ C AVA+ D R A E LK+IR H + D QRL + FA+ LE ++ G +
Sbjct: 207 VDMRNLLMQCAQAVASFDQRRAFEKLKEIREHSSRHGDATQRLGYHFAEALEARITGTMT 266
Query: 62 QICKGIVSKRTLAADILKAYNLFLPA---------------------------------- 87
S RT DILKAY F+ A
Sbjct: 267 TPISA-TSSRTSMVDILKAYKGFVQACPTLIMCYFTANRTINELASKATTLHIIDFGILY 325
Query: 88 -------------KTGGPPKLQITGIDFPQPGFMSAQRVILTVHFPVFYAEAYYVSFEYN 134
+ GPP L++TGI+ PQ GF ++RV T + + + V FEY+
Sbjct: 326 GFQWPCLIQALSKRDIGPPLLRVTGIELPQSGFRPSERVEETGRRLKRFCDKFNVPFEYS 385
Query: 135 AIAKKQETV 143
IAK E +
Sbjct: 386 FIAKNWENI 394
>AT2G29065.1 | Symbols: | GRAS family transcription factor |
chr2:12485049-12486941 FORWARD LENGTH=630
Length = 630
Score = 74.3 bits (181), Expect = 2e-14, Method: Composition-based stats.
Identities = 55/196 (28%), Positives = 81/196 (41%), Gaps = 53/196 (27%)
Query: 1 MIDLRSLLVLCELAVAADDYRNAHELLKKIRHHLNAFADGNQRLAHIFADGLEGQLAGPG 60
++D R+LL C A++ D A E L +IR + D QRLAH FA+ LE +L G
Sbjct: 246 VVDFRTLLTHCAQAISTGDKTTALEFLLQIRQQSSPLGDAGQRLAHCFANALEARLQGST 305
Query: 61 SQICKG-----IVSKRTLAADILKAYNLFLPA---------------------------- 87
+ + S + AAD ++AY ++L +
Sbjct: 306 GPMIQTYYNALTSSLKDTAADTIRAYRVYLSSSPFVTLMYFFSIWMILDVAKDAPVLHIV 365
Query: 88 -------------------KTGGPPKLQITGIDFPQPGFMSAQRVILTVHFPVFYAEAYY 128
+ P KL+ITGI+ PQ GF A+R+ T Y + +
Sbjct: 366 DFGILYGFQWPMFIQSISDRKDVPRKLRITGIELPQCGFRPAERIEETGRRLAEYCKRFN 425
Query: 129 VSFEYNAIAKKQ-ETV 143
V FEY AIA + ET+
Sbjct: 426 VPFEYKAIASQNWETI 441
>AT5G48150.2 | Symbols: PAT1 | GRAS family transcription factor |
chr5:19522497-19524053 REVERSE LENGTH=490
Length = 490
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 70/180 (38%), Gaps = 48/180 (26%)
Query: 3 DLRSLLVLCELAVAADDYRNAHELLKKIRHHLNAFADGNQRLAHIFADGLEGQLAGPGSQ 62
DLR+ LV C A++ +D AH +++K+R ++ + QRL +GL QLA GS
Sbjct: 118 DLRADLVSCAKAMSENDLMMAHSMMEKLRQMVSVSGEPIQRLGAYLLEGLVAQLASSGSS 177
Query: 63 ICK-----------------------------GIVSKRTLAADILKAYNLF--------- 84
I K G +S A+ +K N
Sbjct: 178 IYKALNRCPEPASTELLSYMHILYEVCPYFKFGYMSANGAIAEAMKEENRVHIIDFQIGQ 237
Query: 85 ----------LPAKTGGPPKLQITGIDFPQPGFMSAQRVILTVHFPVFYAEAYYVSFEYN 134
A+ GGPP+++ITGID + + + + A+ + V FE+N
Sbjct: 238 GSQWVTLIQAFAARPGGPPRIRITGIDDMTSAYARGGGLSIVGNRLAKLAKQFNVPFEFN 297
>AT5G48150.1 | Symbols: PAT1 | GRAS family transcription factor |
chr5:19522497-19524053 REVERSE LENGTH=490
Length = 490
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 70/180 (38%), Gaps = 48/180 (26%)
Query: 3 DLRSLLVLCELAVAADDYRNAHELLKKIRHHLNAFADGNQRLAHIFADGLEGQLAGPGSQ 62
DLR+ LV C A++ +D AH +++K+R ++ + QRL +GL QLA GS
Sbjct: 118 DLRADLVSCAKAMSENDLMMAHSMMEKLRQMVSVSGEPIQRLGAYLLEGLVAQLASSGSS 177
Query: 63 ICK-----------------------------GIVSKRTLAADILKAYNLF--------- 84
I K G +S A+ +K N
Sbjct: 178 IYKALNRCPEPASTELLSYMHILYEVCPYFKFGYMSANGAIAEAMKEENRVHIIDFQIGQ 237
Query: 85 ----------LPAKTGGPPKLQITGIDFPQPGFMSAQRVILTVHFPVFYAEAYYVSFEYN 134
A+ GGPP+++ITGID + + + + A+ + V FE+N
Sbjct: 238 GSQWVTLIQAFAARPGGPPRIRITGIDDMTSAYARGGGLSIVGNRLAKLAKQFNVPFEFN 297