Miyakogusa Predicted Gene

Lj4g3v2121810.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2121810.1 tr|Q66KP7|Q66KP7_XENLA MGC85550 protein
OS=Xenopus laevis GN=rps28p9 PE=4 SV=1,77.05,2e-19,no
description,Nucleic acid-binding, OB-fold; seg,NULL;
RIBOSOMAL_S28E,Ribosomal protein S28e; 40S R,93501_g.1
         (65 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03850.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...    87   3e-18
AT3G10090.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...    87   3e-18
AT5G64140.1 | Symbols: RPS28 | ribosomal protein S28 | chr5:2566...    85   1e-17

>AT5G03850.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
          protein | chr5:1028542-1028736 REVERSE LENGTH=64
          Length = 64

 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/51 (82%), Positives = 48/51 (94%), Gaps = 1/51 (1%)

Query: 1  MESQVKHAIVVKIMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDI 51
          M+SQ+KHA+VVK+MGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGDI
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDI 50


>AT3G10090.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
          protein | chr3:3108960-3109154 REVERSE LENGTH=64
          Length = 64

 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/51 (82%), Positives = 48/51 (94%), Gaps = 1/51 (1%)

Query: 1  MESQVKHAIVVKIMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDI 51
          M+SQ+KHA+VVK+MGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGDI
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDI 50


>AT5G64140.1 | Symbols: RPS28 | ribosomal protein S28 |
          chr5:25667529-25667723 REVERSE LENGTH=64
          Length = 64

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/51 (80%), Positives = 47/51 (92%), Gaps = 1/51 (1%)

Query: 1  MESQVKHAIVVKIMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDI 51
          M+SQ+KHA+VVK+MGRTGSRGQVTQVRVKF  D +R IMRNVKGPVREGD+
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRFIMRNVKGPVREGDV 50