Miyakogusa Predicted Gene

Lj4g3v2120520.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2120520.1 Non Chatacterized Hit- tr|J3MH55|J3MH55_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB06G3,61.18,0.00000000000009,seg,NULL; DUF1517,Protein of unknown
function DUF1517,CUFF.50273.1
         (196 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57345.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...    93   1e-19

>AT5G57345.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr5:23229562-23230587 REVERSE LENGTH=188
          Length = 188

 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/185 (40%), Positives = 88/185 (47%), Gaps = 13/185 (7%)

Query: 9   SIASSHQSFXXX----XXXXXXXSNFRTLHPSSTSLKTIYCXXXXXXXXXXXXXNENKXX 64
           +IASS QSF              SN     P+S   K+ +              NEN+  
Sbjct: 5   AIASSRQSFLSNNFSFQHSFKPKSNVNLTRPNSICCKSSH----HDDETDSSRKNENQLA 60

Query: 65  XXXXXXXXXXXXXXGSVHDASAAKSGGRIGGQSFKSSAPRSAPRINNKSRTNIYVNPRVA 124
                         GSV DA AAKSGGRIGGQ+F+SSAPR  PRINN+SRTNIYVNP+VA
Sbjct: 61  KLAIATLAVGVLALGSVGDAFAAKSGGRIGGQAFRSSAPRPPPRINNRSRTNIYVNPQVA 120

Query: 125 PPLXXXXXXXXXXXXXXXXXXXXFSFFXXXXXXXXXXXXXFDTIVLFMLLGAGAAVVRRF 184
           PPL                    FSFF             FD ++LFM  GA +AV R F
Sbjct: 121 PPL-----IGGYGYGYGGYGWSPFSFFAPGPAVAVGVGGGFDLLLLFMFFGAASAVARNF 175

Query: 185 FRSKN 189
           FRS+N
Sbjct: 176 FRSRN 180