Miyakogusa Predicted Gene

Lj4g3v2120440.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2120440.1 tr|Q647J9|Q647J9_MEDSA Homogentisate
phytylprenyltransferase OS=Medicago sativa GN=Hpt1 PE=2
SV=1,79.37,0,BACTERIOCHLOROPHYLL SYNTHASE,NULL;
PRENYLTRANSFERASES,NULL; seg,NULL; UbiA,UbiA prenyltransferase
fa,CUFF.50266.1
         (415 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G18950.1 | Symbols: HPT1, TPT1, ATHPT, VTE2 | homogentisate p...   509   e-144
AT3G11945.1 | Symbols: PDS2, ATHST, HST | homogentisate prenyltr...   161   9e-40
AT3G11945.2 | Symbols: PDS2, ATHST, HST | homogentisate prenyltr...   160   2e-39
AT3G51820.1 | Symbols: ATG4, G4, CHLG | UbiA prenyltransferase f...    49   9e-06

>AT2G18950.1 | Symbols: HPT1, TPT1, ATHPT, VTE2 | homogentisate
           phytyltransferase 1 | chr2:8207491-8210047 FORWARD
           LENGTH=393
          Length = 393

 Score =  509 bits (1311), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 251/349 (71%), Positives = 294/349 (84%), Gaps = 8/349 (2%)

Query: 70  NHQSKGIGGGS---MYQECNRKYVVKAAPGKSFESEPDALDPKDVLGSVKNSLDAFYRFS 126
           N+  +  G GS   +Y +   ++ V A  G     +P+A D      S ++SLDAFYRFS
Sbjct: 50  NNLVRPDGQGSSLLLYPKHKSRFRVNATAG-----QPEAFDSNSKQKSFRDSLDAFYRFS 104

Query: 127 RPHTVIGTALSIISVSLLAVERLSDVSPLFFTGLLEAVVAALFMNIYIVGLNQLSDVEID 186
           RPHTVIGT LSI+SVS LAVE++SD+SPL FTG+LEAVVAAL MNIYIVGLNQLSDVEID
Sbjct: 105 RPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQLSDVEID 164

Query: 187 KINKPYLPLASGEYSFNTGVIIVASFSILSFWLGWVVGSWPLFWALFISFMLGTAYSIDV 246
           K+NKPYLPLASGEYS NTG+ IVASFSI+SFWLGW+VGSWPLFWALF+SFMLGTAYSI++
Sbjct: 165 KVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLGTAYSINL 224

Query: 247 PWLRWKRFAVVAAMCILAVRAVIVQLAFFLHMQTFVFKRPALFSRPLIFATAFMSFFSVV 306
           P LRWKRFA+VAAMCILAVRA+IVQ+AF+LH+QT VF RP LF+RPLIFATAFMSFFSVV
Sbjct: 225 PLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATAFMSFFSVV 284

Query: 307 IALFKDIPDIDGDKIFGIQSFSVRLGQKRVFWICVALLEMAYGVALVVGAASPCLWSKIV 366
           IALFKDIPDI+GDKIFGI+SFSV LGQKRVFW CV LL+MAY VA++VGA SP +WSK++
Sbjct: 285 IALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSPFIWSKVI 344

Query: 367 TGLGHAVLAAILFYRAKSVDLRSKASITSFYMFIWKLFYAEYLLIPLVR 415
           + +GH +LA  L+ RAKSVDL SK  ITS YMFIWKLFYAEYLL+P ++
Sbjct: 345 SVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWKLFYAEYLLLPFLK 393


>AT3G11945.1 | Symbols: PDS2, ATHST, HST | homogentisate
           prenyltransferase | chr3:3780041-3782880 REVERSE
           LENGTH=386
          Length = 386

 Score =  161 bits (407), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 114/340 (33%), Positives = 185/340 (54%), Gaps = 14/340 (4%)

Query: 80  SMYQECNRKYVVKAAPGKSFESEPDALDPKDVLGSVKNSLDAFYRFSRPHTVIGTAL-SI 138
           S +   N + +   A  +   +E D  DP  VL  +    +A +RF RPHT+ GTAL S 
Sbjct: 56  SKFVSTNYRKISIRACSQVGAAESD--DP--VLDRIARFQNACWRFLRPHTIRGTALGST 111

Query: 139 ISVSLLAVERLSDVSPLFFTGLLEAVVAALFMNIYIVGLNQLSDVEIDKINKPYLPLASG 198
             V+   +E    +        L  ++A +  N YIVG+NQ+ D+ IDK+NKPYLP+A+G
Sbjct: 112 ALVTRALIENTHLIKWSLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAG 171

Query: 199 EYSFNTGVIIVASFSILSFWL-GWVVGSWPLFWALF-ISFMLGTAYSIDVPWLRWKRFAV 256
           + S  +  ++V  F+I    + G+  G  P   +L+ +   LGT YS  VP LR KRF V
Sbjct: 172 DLSVQSAWLLVIFFAIAGLLVVGFNFG--PFITSLYSLGLFLGTIYS--VPPLRMKRFPV 227

Query: 257 VAAMCILAVRAVIVQLAFFLHMQTFVFKRPALFSRPLIFATAFMSFFSVVIALFKDIPDI 316
            A + I  VR  ++    + H        P  +S P+ F T+F++ F++VIA+ KD+PD+
Sbjct: 228 AAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDV 286

Query: 317 DGDKIFGIQSFSVRLGQKRVFWICVALLEMAYGVALVVGAASPCLWSKIVTGLGHAVLAA 376
           +GD+ F I + + +LG + + ++   LL + Y  A+ +    P ++   +    H +LA+
Sbjct: 287 EGDRKFQISTLATKLGVRNIAFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILAS 346

Query: 377 ILFYRAKSVDLR--SKASITSFYMFIWKLFYAEYLLIPLV 414
            L ++   ++    +K +I+ +Y FIW LFYAEYLL P +
Sbjct: 347 GLIFQTWVLEKANYTKEAISGYYRFIWNLFYAEYLLFPFL 386


>AT3G11945.2 | Symbols: PDS2, ATHST, HST | homogentisate
           prenyltransferase | chr3:3780041-3782880 REVERSE
           LENGTH=393
          Length = 393

 Score =  160 bits (404), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/319 (34%), Positives = 178/319 (55%), Gaps = 14/319 (4%)

Query: 101 SEPDALDPKDVLGSVKNSLDAFYRFSRPHTVIGTAL-SIISVSLLAVERLSDVSPLFFTG 159
           +E D  DP  VL  +    +A +RF RPHT+ GTAL S   V+   +E    +       
Sbjct: 84  AESD--DP--VLDRIARFQNACWRFLRPHTIRGTALGSTALVTRALIENTHLIKWSLVLK 139

Query: 160 LLEAVVAALFMNIYIVGLNQLSDVEIDKINKPYLPLASGEYSFNTGVIIVASFSILSFWL 219
            L  ++A +  N YIVG+NQ+ D+ IDK+NKPYLP+A+G+ S  +  ++V  F+I    +
Sbjct: 140 ALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGLLV 199

Query: 220 -GWVVGSWPLFWALF-ISFMLGTAYSIDVPWLRWKRFAVVAAMCILAVRAVIVQLAFFLH 277
            G+  G  P   +L+ +   LGT YS  VP LR KRF V A + I  VR  ++    + H
Sbjct: 200 VGFNFG--PFITSLYSLGLFLGTIYS--VPPLRMKRFPVAAFLIIATVRGFLLNFGVY-H 254

Query: 278 MQTFVFKRPALFSRPLIFATAFMSFFSVVIALFKDIPDIDGDKIFGIQSFSVRLGQKRVF 337
                   P  +S P+ F T+F++ F++VIA+ KD+PD++GD+ F I + + +LG + + 
Sbjct: 255 ATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIA 314

Query: 338 WICVALLEMAYGVALVVGAASPCLWSKIVTGLGHAVLAAILFYRAKSVDLR--SKASITS 395
           ++   LL + Y  A+ +    P ++   +    H +LA+ L ++   ++    +K +I+ 
Sbjct: 315 FLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISG 374

Query: 396 FYMFIWKLFYAEYLLIPLV 414
           +Y FIW LFYAEYLL P +
Sbjct: 375 YYRFIWNLFYAEYLLFPFL 393


>AT3G51820.1 | Symbols: ATG4, G4, CHLG | UbiA prenyltransferase
           family protein | chr3:19216301-19218934 REVERSE
           LENGTH=387
          Length = 387

 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 20/182 (10%)

Query: 173 YIVGLNQLSDVEIDKINKPYLPLASGEYSFNTGVIIV--------ASFSILSFWLGWVVG 224
           Y   +N   D +ID IN+PY P+ SG  S    +  V            IL  W G    
Sbjct: 150 YTQTINDWYDRDIDAINEPYRPIPSGAISEPEVITQVWVLLLGGLGIAGILDVWAGHTTP 209

Query: 225 SWPLFWALFISFMLGTAYSIDVPWLRWKRFAVVAAMCILAVRAVIVQLAFFLHMQTFVFK 284
           +  +F+      +L   YS   P L+ K+   V      A+ A  + L ++     F   
Sbjct: 210 T--VFYLALGGSLLSYIYS--APPLKLKQNGWVGN---FALGASYISLPWWAGQALFGTL 262

Query: 285 RPALFSRPLIFATAFMSFFSVVIALFKDIPDIDGDKIFGIQSFSVRLGQKRVFWICVALL 344
            P +    L+++ A +      IA+  D   ++GD+  G+QS  V  G +   WICV  +
Sbjct: 263 TPDVVVLTLLYSIAGLG-----IAIVNDFKSVEGDRALGLQSLPVAFGTETAKWICVGAI 317

Query: 345 EM 346
           ++
Sbjct: 318 DI 319