Miyakogusa Predicted Gene

Lj4g3v2120380.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2120380.1 tr|F2CQT6|F2CQT6_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,81.82,1e-18,seg,NULL;
DUF1777,Domain of unknown function DUF1777,CUFF.50255.1
         (184 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57370.1 | Symbols:  | unknown protein; CONTAINS InterPro DOM...   129   1e-30

>AT5G57370.1 | Symbols:  | unknown protein; CONTAINS InterPro
           DOMAIN/s: Protein of unknown function DUF1777
           (InterPro:IPR013957); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:23244811-23245470 FORWARD LENGTH=219
          Length = 219

 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/123 (60%), Positives = 86/123 (69%), Gaps = 8/123 (6%)

Query: 69  PSPDQP-RKRHRRDSVEDD-HKDTKKVVSDFVDGIV------KEQQQKHKXXXXXXXXXX 120
           PSPD P RKR R+ SV+D+  ++ K+VV+D VD         K++Q              
Sbjct: 97  PSPDAPSRKRPRQGSVDDEKERNRKRVVTDSVDENASTITKKKDKQPSDAADNGGGEDEE 156

Query: 121 XXXXDEAEMMKMLGIPTGFDSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAE 180
               +E EMMKMLGIPTGFDSTKGKPV GADVSG+RAVTKRQPRQYMNRRGGFNRPLPAE
Sbjct: 157 GMDVNEIEMMKMLGIPTGFDSTKGKPVAGADVSGIRAVTKRQPRQYMNRRGGFNRPLPAE 216

Query: 181 KNR 183
           +NR
Sbjct: 217 RNR 219