Miyakogusa Predicted Gene

Lj4g3v2120370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2120370.1 tr|I3S2B8|I3S2B8_LOTJA Ribulose bisphosphate
carboxylase small chain OS=Lotus japonicus PE=2 SV=1,99.42,0,Ribulose
bisphosphate carboxylase, smal,Ribulose bisphosphate carboxylase small
chain, domain; RuBis,CUFF.50254.1
         (173 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G38430.1 | Symbols:  | Ribulose bisphosphate carboxylase (sma...   194   2e-50
AT5G38420.1 | Symbols:  | Ribulose bisphosphate carboxylase (sma...   193   4e-50
AT5G38410.1 | Symbols:  | Ribulose bisphosphate carboxylase (sma...   191   2e-49
AT1G67090.1 | Symbols: RBCS1A | ribulose bisphosphate carboxylas...   190   3e-49
AT5G38410.3 | Symbols:  | Ribulose bisphosphate carboxylase (sma...   188   2e-48
AT5G38410.2 | Symbols:  | Ribulose bisphosphate carboxylase (sma...   183   5e-47
AT1G67090.2 | Symbols: RBCS1A | ribulose bisphosphate carboxylas...    88   4e-18

>AT5G38430.1 | Symbols:  | Ribulose bisphosphate carboxylase (small
           chain) family protein | chr5:15384350-15385155 REVERSE
           LENGTH=181
          Length = 181

 Score =  194 bits (494), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 92/160 (57%), Positives = 116/160 (72%), Gaps = 4/160 (2%)

Query: 13  AGFVGLKSNSSNLYPVT-GFNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLPPLTDE 71
           A F GLKS++S  +PVT   N   +  TSNG +  CMK W PI  +KFETLSYLP LTD 
Sbjct: 22  APFTGLKSSAS--FPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLTDV 79

Query: 72  SIAKEVDYMLKKGWIPCLEFD-ELGHIRRENSRMPGYYDGRYWTLWKLPMFGCNDSSQVL 130
            +AKEVDY+L+  WIPC+EF+ E G + RE+   PGYYDGRYWT+WKLP+FGC DS+QVL
Sbjct: 80  ELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVL 139

Query: 131 NEIQECKRAYPNAYIRCIAFDNHRHMQSMAFIIQKPAANT 170
            E++ECK+ YP A+IR I FDN R +Q ++FI  KP + T
Sbjct: 140 KEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFT 179


>AT5G38420.1 | Symbols:  | Ribulose bisphosphate carboxylase (small
           chain) family protein | chr5:15381203-15381978 REVERSE
           LENGTH=181
          Length = 181

 Score =  193 bits (491), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 91/160 (56%), Positives = 116/160 (72%), Gaps = 4/160 (2%)

Query: 13  AGFVGLKSNSSNLYPVT-GFNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLPPLTDE 71
           A F GLKS++S  +PVT   N   +  TSNG +  CMK W PI  +KFETLSYLP L+D 
Sbjct: 22  APFTGLKSSAS--FPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLSDV 79

Query: 72  SIAKEVDYMLKKGWIPCLEFD-ELGHIRRENSRMPGYYDGRYWTLWKLPMFGCNDSSQVL 130
            +AKEVDY+L+  WIPC+EF+ E G + RE+   PGYYDGRYWT+WKLP+FGC DS+QVL
Sbjct: 80  ELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVL 139

Query: 131 NEIQECKRAYPNAYIRCIAFDNHRHMQSMAFIIQKPAANT 170
            E++ECK+ YP A+IR I FDN R +Q ++FI  KP + T
Sbjct: 140 KEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFT 179


>AT5G38410.1 | Symbols:  | Ribulose bisphosphate carboxylase (small
           chain) family protein | chr5:15377501-15378306 REVERSE
           LENGTH=181
          Length = 181

 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/160 (55%), Positives = 116/160 (72%), Gaps = 4/160 (2%)

Query: 13  AGFVGLKSNSSNLYPVT-GFNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLPPLTDE 71
           A F GLKS+++  +PVT   N+  +   SNG +  CMK W PI  +KFETLSYLP L+D 
Sbjct: 22  APFTGLKSSAA--FPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDV 79

Query: 72  SIAKEVDYMLKKGWIPCLEFD-ELGHIRRENSRMPGYYDGRYWTLWKLPMFGCNDSSQVL 130
            +AKEVDY+L+  WIPC+EF+ E G + RE+   PGYYDGRYWT+WKLP+FGC DS+QVL
Sbjct: 80  ELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVL 139

Query: 131 NEIQECKRAYPNAYIRCIAFDNHRHMQSMAFIIQKPAANT 170
            E++ECK+ YP A+IR I FDN R +Q ++FI  KP + T
Sbjct: 140 KEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFT 179


>AT1G67090.1 | Symbols: RBCS1A | ribulose bisphosphate carboxylase
           small chain 1A | chr1:25048465-25049249 REVERSE
           LENGTH=180
          Length = 180

 Score =  190 bits (483), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 93/176 (52%), Positives = 122/176 (69%), Gaps = 8/176 (4%)

Query: 1   MSAGTFTALVAGAGFV----GLKSNSSNLYPVT-GFNEWKSKTTSNGSKTLCMKTWNPIN 55
           +S+ T  A  A A  V    GLKS+++  +P T   N   +  TSNG +  CM+ W PI 
Sbjct: 6   LSSATMVASPAQATMVAPFNGLKSSAA--FPATRKANNDITSITSNGGRVNCMQVWPPIG 63

Query: 56  NRKFETLSYLPPLTDESIAKEVDYMLKKGWIPCLEFD-ELGHIRRENSRMPGYYDGRYWT 114
            +KFETLSYLP LTD  +AKEVDY+++  WIPC+EF+ E G + RE+   PGYYDGRYWT
Sbjct: 64  KKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWT 123

Query: 115 LWKLPMFGCNDSSQVLNEIQECKRAYPNAYIRCIAFDNHRHMQSMAFIIQKPAANT 170
           +WKLP+FGC DS+QVL E++ECK+ YPNA+IR I FDN R +Q ++FI  KP + T
Sbjct: 124 MWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPPSFT 179


>AT5G38410.3 | Symbols:  | Ribulose bisphosphate carboxylase (small
           chain) family protein | chr5:15377501-15378306 REVERSE
           LENGTH=186
          Length = 186

 Score =  188 bits (477), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 88/165 (53%), Positives = 116/165 (70%), Gaps = 9/165 (5%)

Query: 13  AGFVGLKSNSSNLYPVT-GFNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLPPLTDE 71
           A F GLKS+++  +PVT   N+  +   SNG +  CMK W PI  +KFETLSYLP L+D 
Sbjct: 22  APFTGLKSSAA--FPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDV 79

Query: 72  SIAKEVDYMLKKGWIPCLEFD------ELGHIRRENSRMPGYYDGRYWTLWKLPMFGCND 125
            +AKEVDY+L+  WIPC+EF+      + G + RE+   PGYYDGRYWT+WKLP+FGC D
Sbjct: 80  ELAKEVDYLLRNKWIPCVEFELEVINTKHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTD 139

Query: 126 SSQVLNEIQECKRAYPNAYIRCIAFDNHRHMQSMAFIIQKPAANT 170
           S+QVL E++ECK+ YP A+IR I FDN R +Q ++FI  KP + T
Sbjct: 140 SAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFT 184


>AT5G38410.2 | Symbols:  | Ribulose bisphosphate carboxylase (small
           chain) family protein | chr5:15377501-15378306 REVERSE
           LENGTH=174
          Length = 174

 Score =  183 bits (464), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 86/159 (54%), Positives = 112/159 (70%), Gaps = 9/159 (5%)

Query: 13  AGFVGLKSNSSNLYPVT-GFNEWKSKTTSNGSKTLCMKTWNPINNRKFETLSYLPPLTDE 71
           A F GLKS+++  +PVT   N+  +   SNG +  CMK W PI  +KFETLSYLP L+D 
Sbjct: 22  APFTGLKSSAA--FPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDV 79

Query: 72  SIAKEVDYMLKKGWIPCLEFDELGHIRRENSRMPGYYDGRYWTLWKLPMFGCNDSSQVLN 131
            +AKEVDY+L+  WIPC+EF+       E+   PGYYDGRYWT+WKLP+FGC DS+QVL 
Sbjct: 80  ELAKEVDYLLRNKWIPCVEFE------LEHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLK 133

Query: 132 EIQECKRAYPNAYIRCIAFDNHRHMQSMAFIIQKPAANT 170
           E++ECK+ YP A+IR I FDN R +Q ++FI  KP + T
Sbjct: 134 EVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSFT 172


>AT1G67090.2 | Symbols: RBCS1A | ribulose bisphosphate carboxylase
           small chain 1A | chr1:25048590-25049249 REVERSE
           LENGTH=136
          Length = 136

 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 62/97 (63%), Gaps = 7/97 (7%)

Query: 1   MSAGTFTALVAGAGFV----GLKSNSSNLYPVT-GFNEWKSKTTSNGSKTLCMKTWNPIN 55
           +S+ T  A  A A  V    GLKS+++  +P T   N   +  TSNG +  CM+ W PI 
Sbjct: 6   LSSATMVASPAQATMVAPFNGLKSSAA--FPATRKANNDITSITSNGGRVNCMQVWPPIG 63

Query: 56  NRKFETLSYLPPLTDESIAKEVDYMLKKGWIPCLEFD 92
            +KFETLSYLP LTD  +AKEVDY+++  WIPC+EFD
Sbjct: 64  KKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFD 100