Miyakogusa Predicted Gene

Lj4g3v2094890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2094890.1 Non Chatacterized Hit- tr|C5YJI7|C5YJI7_SORBI
Putative uncharacterized protein Sb07g007800
OS=Sorghu,33.54,0.0000000004,seg,NULL,CUFF.50241.1
         (167 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G18850.1 | Symbols:  | SET domain-containing protein | chr2:8...    83   8e-17
AT2G18850.2 | Symbols:  | SET domain-containing protein | chr2:8...    83   9e-17

>AT2G18850.1 | Symbols:  | SET domain-containing protein |
           chr2:8160788-8163479 FORWARD LENGTH=543
          Length = 543

 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 4/139 (2%)

Query: 29  CKGFSPKERIYLNSSESG-WENATAKRLLEIERIIQLNELELYFAEDNGCTSVDFYSPRN 87
           CKG   KE + L+ S S    NA  ++LL   RI+ L+++E+YF ED  CT    YS RN
Sbjct: 34  CKGLCVKETLNLSGSLSQQLLNAALEKLLHFGRIVNLDKVEVYFGED-ACTPAGIYSVRN 92

Query: 88  ELEALNSVVFLIDISLSSCSHLHTNILQGLRQTMLDLISDFGDKNSVKGVVEIDHNCDQE 147
           E+ AL+ ++ LI +S    + + T   + LR  +   I++       K  V   + C++E
Sbjct: 93  EISALSWILSLIPVSCKMQTQVDT--FEALRAALKGRINEVVGAEKEKARVVDSYRCEKE 150

Query: 148 EHMIEWGESNGLKTQLKIA 166
             ++EWG+ NG+KT+L+IA
Sbjct: 151 SKLVEWGQDNGVKTKLQIA 169


>AT2G18850.2 | Symbols:  | SET domain-containing protein |
           chr2:8160788-8163479 FORWARD LENGTH=536
          Length = 536

 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 4/139 (2%)

Query: 29  CKGFSPKERIYLNSSESG-WENATAKRLLEIERIIQLNELELYFAEDNGCTSVDFYSPRN 87
           CKG   KE + L+ S S    NA  ++LL   RI+ L+++E+YF ED  CT    YS RN
Sbjct: 34  CKGLCVKETLNLSGSLSQQLLNAALEKLLHFGRIVNLDKVEVYFGED-ACTPAGIYSVRN 92

Query: 88  ELEALNSVVFLIDISLSSCSHLHTNILQGLRQTMLDLISDFGDKNSVKGVVEIDHNCDQE 147
           E+ AL+ ++ LI +S    + + T   + LR  +   I++       K  V   + C++E
Sbjct: 93  EISALSWILSLIPVSCKMQTQVDT--FEALRAALKGRINEVVGAEKEKARVVDSYRCEKE 150

Query: 148 EHMIEWGESNGLKTQLKIA 166
             ++EWG+ NG+KT+L+IA
Sbjct: 151 SKLVEWGQDNGVKTKLQIA 169