Miyakogusa Predicted Gene

Lj4g3v2093730.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2093730.1 Non Chatacterized Hit- tr|C5XQN4|C5XQN4_SORBI
Putative uncharacterized protein Sb03g040990
OS=Sorghu,80.22,0,Yip1,Yip1 domain; seg,NULL; YIP1-RELATED,NULL; GOLGI
MEMBRANE PROTEIN YIP1,NULL,CUFF.50240.1
         (276 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G18840.1 | Symbols:  | Integral membrane Yip1 family protein ...   359   1e-99
AT4G30260.1 | Symbols:  | Integral membrane Yip1 family protein ...   343   6e-95

>AT2G18840.1 | Symbols:  | Integral membrane Yip1 family protein |
           chr2:8158288-8159848 FORWARD LENGTH=281
          Length = 281

 Score =  359 bits (922), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 201/283 (71%), Positives = 208/283 (73%), Gaps = 9/283 (3%)

Query: 1   MSHGDTIPLHPSSQSDIDEIENLIYAS----PATVLXXXXXXXXXXXIPVTTSS---PFI 53
           MS GDT+PLHPSSQSDIDEIENLI  S    P TVL           IPV++SS   PF+
Sbjct: 1   MSQGDTVPLHPSSQSDIDEIENLINESVQSGPGTVLAARPPSPTRPSIPVSSSSSSSPFM 60

Query: 54  NSNLPAPLPPKSSIXXXXXXXXXXXXXXXXXXXXXXXXSSGFGPAPNTLTEPVWDTVKRD 113
            SNLP PL P SS                         +S FG  PNTLTEPVWDTVKRD
Sbjct: 61  QSNLP-PLHPSSS-AQKVTHVPVPPPLPAVSNSSNFQGASAFGSPPNTLTEPVWDTVKRD 118

Query: 114 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLILSWSASVKKSEXXXXXX 173
           LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGL LSWSASVKKSE      
Sbjct: 119 LSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAF 178

Query: 174 XXXXXXXXILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVILKXXXXXXT 233
                   ILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGA+ICMLKDNVILK      T
Sbjct: 179 ALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGAVICMLKDNVILKMVVVSVT 238

Query: 234 LAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID 276
           LAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAI+
Sbjct: 239 LAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAIN 281


>AT4G30260.1 | Symbols:  | Integral membrane Yip1 family protein |
           chr4:14816890-14818722 REVERSE LENGTH=280
          Length = 280

 Score =  343 bits (881), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 195/281 (69%), Positives = 204/281 (72%), Gaps = 6/281 (2%)

Query: 1   MSHGDTIPLHPSSQSDIDEIENLI----YASPATVLXXXXXXXXXXXIPVTTSSPFINSN 56
           MSH DTIPL+ SSQSDIDEIEN++     + P TVL           IPV+ SSPF+ SN
Sbjct: 1   MSHNDTIPLYQSSQSDIDEIENMMNDSFQSGPGTVLPARPPSPIRPSIPVS-SSPFVQSN 59

Query: 57  LPAPLPPKSSIXXXXXXXXXXXXXXXXXXXXXXXXS-SGFGPAPNTLTEPVWDTVKRDLS 115
           LP   P  SS                           SGFG  PNTLTEPVWDTVKRDLS
Sbjct: 60  LPPLPPSSSSSTQKVMPVPAPPPLPSAGNEGNKSIGGSGFGSPPNTLTEPVWDTVKRDLS 119

Query: 116 RIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLILSWSASVKKSEXXXXXXXX 175
           RIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGL LSWSASVKKSE        
Sbjct: 120 RIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFAL 179

Query: 176 XXXXXXILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGALICMLKDNVILKXXXXXXTLA 235
                 ILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGA+ICMLKDNVILK      TLA
Sbjct: 180 LAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGAVICMLKDNVILKMVVVSVTLA 239

Query: 236 WSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID 276
           WSSWAAYPFMS+AVNPRRKALALYPVFLMYVSVGFLIIAI+
Sbjct: 240 WSSWAAYPFMSAAVNPRRKALALYPVFLMYVSVGFLIIAIN 280