Miyakogusa Predicted Gene

Lj4g3v2046240.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2046240.1 Non Chatacterized Hit- tr|Q5J7B4|Q5J7B4_GINBI
Putative 1-D-deoxyxylulose 5-phosphate synthase
OS=Gin,78.57,0.000002,Thiamin diphosphate-binding fold
(THDP-binding),NULL; DXP_synthase_N,Deoxyxylulose-5-phosphate
synth,CUFF.50184.1
         (130 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G15560.1 | Symbols: CLA1, DEF, CLA, DXS, DXPS2 | Deoxyxylulos...   140   2e-34
AT3G21500.1 | Symbols: DXPS1 | 1-deoxy-D-xylulose 5-phosphate sy...   139   7e-34
AT3G21500.2 | Symbols: DXPS1 | 1-deoxy-D-xylulose 5-phosphate sy...   138   8e-34
AT5G11380.2 | Symbols: DXPS3 | 1-deoxy-D-xylulose 5-phosphate sy...    95   1e-20
AT5G11380.1 | Symbols: DXPS3 | 1-deoxy-D-xylulose 5-phosphate sy...    95   1e-20

>AT4G15560.1 | Symbols: CLA1, DEF, CLA, DXS, DXPS2 |
           Deoxyxylulose-5-phosphate synthase |
           chr4:8884218-8887254 FORWARD LENGTH=717
          Length = 717

 Score =  140 bits (354), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/167 (48%), Positives = 93/167 (55%), Gaps = 55/167 (32%)

Query: 19  FSGEKPSTPILDTINYPIH--------MKNLSI--------------------------- 43
           +   +P TP+LDTINYPIH        +K LS                            
Sbjct: 67  YYSNRPPTPLLDTINYPIHMKNLSVKELKQLSDELRSDVIFNVSKTGGHLGSSLGVVELT 126

Query: 44  --------------------QTYGHKILTGRRSKMHSIRQTDGLAGFPKRDESVHDAFGV 83
                               Q+Y HKILTGRR KM ++RQT+GL+GF KR ES HD FG 
Sbjct: 127 VALHYIFNTPQDKILWDVGHQSYPHKILTGRRGKMPTMRQTNGLSGFTKRGESEHDCFGT 186

Query: 84  GHSSTSISAALGMAVARDLMRKENHVVSVIGDGAMTAGQAYEAMNNA 130
           GHSST+ISA LGMAV RDL  K N+VV+VIGDGAMTAGQAYEAMNNA
Sbjct: 187 GHSSTTISAGLGMAVGRDLKGKNNNVVAVIGDGAMTAGQAYEAMNNA 233


>AT3G21500.1 | Symbols: DXPS1 | 1-deoxy-D-xylulose 5-phosphate
           synthase 1 | chr3:7573907-7576594 REVERSE LENGTH=640
          Length = 640

 Score =  139 bits (349), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 79/167 (47%), Positives = 93/167 (55%), Gaps = 55/167 (32%)

Query: 19  FSGEKPSTPILDTINYPIHMK-------------------------------NLSI---- 43
           +   +P TP+LDTIN+P+HMK                               NL +    
Sbjct: 57  YYSNRPPTPLLDTINHPMHMKNLSIKELKVLSDELRSDVIFNVSKTGGHLGSNLGVVELT 116

Query: 44  --------------------QTYGHKILTGRRSKMHSIRQTDGLAGFPKRDESVHDAFGV 83
                               Q+Y HKILTGRR KM +IRQT+GL+G+ KR ES HD+FG 
Sbjct: 117 VALHYIFNTPHDKILWDVGHQSYPHKILTGRRGKMKTIRQTNGLSGYTKRRESEHDSFGT 176

Query: 84  GHSSTSISAALGMAVARDLMRKENHVVSVIGDGAMTAGQAYEAMNNA 130
           GHSST++SA LGMAV RDL    N VVSVIGDGAMTAGQAYEAMNNA
Sbjct: 177 GHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNA 223


>AT3G21500.2 | Symbols: DXPS1 | 1-deoxy-D-xylulose 5-phosphate
           synthase 1 | chr3:7573907-7576594 REVERSE LENGTH=641
          Length = 641

 Score =  138 bits (348), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 79/167 (47%), Positives = 93/167 (55%), Gaps = 55/167 (32%)

Query: 19  FSGEKPSTPILDTINYPIHMK-------------------------------NLSI---- 43
           +   +P TP+LDTIN+P+HMK                               NL +    
Sbjct: 57  YYSNRPPTPLLDTINHPMHMKNLSIKELKVLSDELRSDVIFNVSKTGGHLGSNLGVVELT 116

Query: 44  --------------------QTYGHKILTGRRSKMHSIRQTDGLAGFPKRDESVHDAFGV 83
                               Q+Y HKILTGRR KM +IRQT+GL+G+ KR ES HD+FG 
Sbjct: 117 VALHYIFNTPHDKILWDVGHQSYPHKILTGRRGKMKTIRQTNGLSGYTKRRESEHDSFGT 176

Query: 84  GHSSTSISAALGMAVARDLMRKENHVVSVIGDGAMTAGQAYEAMNNA 130
           GHSST++SA LGMAV RDL    N VVSVIGDGAMTAGQAYEAMNNA
Sbjct: 177 GHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNA 223


>AT5G11380.2 | Symbols: DXPS3 | 1-deoxy-D-xylulose 5-phosphate
           synthase 3 | chr5:3630172-3632762 FORWARD LENGTH=565
          Length = 565

 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/87 (56%), Positives = 62/87 (71%), Gaps = 1/87 (1%)

Query: 44  QTYGHKILTGRRSKMHSIRQTDGLAGFPKRDESVHDAFGVGHSSTSISAALGMAVARDLM 103
           QTY HK+LT R S + S RQ  G++G   R ES +D+FG GH   SISA LG+AVARD+ 
Sbjct: 149 QTYAHKVLTRRWSAIPS-RQNSGISGVTSRLESEYDSFGTGHGCNSISAGLGLAVARDMK 207

Query: 104 RKENHVVSVIGDGAMTAGQAYEAMNNA 130
            K + VV+VI +  +TAGQAYEAM+NA
Sbjct: 208 GKRDRVVAVIDNVTITAGQAYEAMSNA 234


>AT5G11380.1 | Symbols: DXPS3 | 1-deoxy-D-xylulose 5-phosphate
           synthase 3 | chr5:3630172-3633250 FORWARD LENGTH=700
          Length = 700

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/87 (56%), Positives = 62/87 (71%), Gaps = 1/87 (1%)

Query: 44  QTYGHKILTGRRSKMHSIRQTDGLAGFPKRDESVHDAFGVGHSSTSISAALGMAVARDLM 103
           QTY HK+LT R S + S RQ  G++G   R ES +D+FG GH   SISA LG+AVARD+ 
Sbjct: 149 QTYAHKVLTRRWSAIPS-RQNSGISGVTSRLESEYDSFGTGHGCNSISAGLGLAVARDMK 207

Query: 104 RKENHVVSVIGDGAMTAGQAYEAMNNA 130
            K + VV+VI +  +TAGQAYEAM+NA
Sbjct: 208 GKRDRVVAVIDNVTITAGQAYEAMSNA 234