Miyakogusa Predicted Gene

Lj4g3v2046230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2046230.1 Non Chatacterized Hit- tr|I1MSU3|I1MSU3_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,89.9,0,Transketolase,
pyrimidine binding domain,Transketolase-like, pyrimidine-binding
domain; TRANSKETOLAS,CUFF.50183.1
         (416 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G15560.1 | Symbols: CLA1, DEF, CLA, DXS, DXPS2 | Deoxyxylulos...   616   e-177
AT3G21500.2 | Symbols: DXPS1 | 1-deoxy-D-xylulose 5-phosphate sy...   543   e-155
AT3G21500.1 | Symbols: DXPS1 | 1-deoxy-D-xylulose 5-phosphate sy...   537   e-153
AT5G11380.1 | Symbols: DXPS3 | 1-deoxy-D-xylulose 5-phosphate sy...   437   e-123
AT5G11380.2 | Symbols: DXPS3 | 1-deoxy-D-xylulose 5-phosphate sy...   285   3e-77
AT5G50850.1 | Symbols: MAB1 | Transketolase family protein | chr...    64   1e-10
AT1G55510.1 | Symbols: BCDH BETA1 | branched-chain alpha-keto ac...    59   5e-09
AT3G13450.1 | Symbols: DIN4 | Transketolase family protein | chr...    58   1e-08

>AT4G15560.1 | Symbols: CLA1, DEF, CLA, DXS, DXPS2 |
           Deoxyxylulose-5-phosphate synthase |
           chr4:8884218-8887254 FORWARD LENGTH=717
          Length = 717

 Score =  616 bits (1589), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 289/399 (72%), Positives = 331/399 (82%)

Query: 2   RGMVSGSGACFFEELGLFYIGPVDGHDMEDLVHILKDVKALPALGPVLIHVISEKGKGYR 61
           RGM+SG+G+  FEELGL+YIGPVDGH+++DLV ILK+VK+    GPVLIHV++EKG+GY 
Sbjct: 310 RGMISGTGSSLFEELGLYYIGPVDGHNIDDLVAILKEVKSTRTTGPVLIHVVTEKGRGYP 369

Query: 62  PAEVATDKMHGVVKFDPKSGKQLKPKTSTRSYTQYFAESLTAEADADERIVAIHAAMGGG 121
            AE A DK HGVVKFDP +G+Q K    T+SYT YFAE+L AEA+ D+ +VAIHAAMGGG
Sbjct: 370 YAERADDKYHGVVKFDPATGRQFKTTNKTQSYTTYFAEALVAEAEVDKDVVAIHAAMGGG 429

Query: 122 TGLNLFQKHFPERCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVAHDVDL 181
           TGLNLFQ+ FP RCFDVGIAEQHAVTFAAGLA EGLKPFCAIYSSF+QR YDQV HDVDL
Sbjct: 430 TGLNLFQRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDL 489

Query: 182 QKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMAPSDETELMHMVATAAAIDD 241
           QKLPVRFA+DRAGLVGADGPTHCGAFD TFMACLPNM+VMAPSDE +L +MVATA AIDD
Sbjct: 490 QKLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMIVMAPSDEADLFNMVATAVAIDD 549

Query: 242 RPSCFRYPRGNGIGSILPPNNKGTPLEVGKGRVLKEGSRVALVGYGTMVQSCMEAAKVLD 301
           RPSCFRYPRGNGIG  LPP NKG P+E+GKGR+LKEG RVAL+GYG+ VQSC+ AA +L+
Sbjct: 550 RPSCFRYPRGNGIGVALPPGNKGVPIEIGKGRILKEGERVALLGYGSAVQSCLGAAVMLE 609

Query: 302 AHGISTTVADARFCKPLDGNLMRQLAREHEILITVEEGSIGGFGSHVSQFXXXXXXXXXX 361
             G++ TVADARFCKPLD  L+R LA+ HE+LITVEEGSIGGFGSHV QF          
Sbjct: 610 ERGLNVTVADARFCKPLDRALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGK 669

Query: 362 XKWRAMTLPDKYINHGTQRDQIEVAGLSSKHIAATALSL 400
            KWR M LPD+YI+HG   DQ+  AGL   HIAATAL+L
Sbjct: 670 LKWRPMVLPDRYIDHGAPADQLAEAGLMPSHIAATALNL 708


>AT3G21500.2 | Symbols: DXPS1 | 1-deoxy-D-xylulose 5-phosphate
           synthase 1 | chr3:7573907-7576594 REVERSE LENGTH=641
          Length = 641

 Score =  543 bits (1400), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 252/349 (72%), Positives = 293/349 (83%)

Query: 3   GMVSGSGACFFEELGLFYIGPVDGHDMEDLVHILKDVKALPALGPVLIHVISEKGKGYRP 62
           GM+  + +  FEELG  Y+GPVDGH+++DLV IL+ +K+   +GPVLIHV++EKG+GY  
Sbjct: 269 GMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRGYPY 328

Query: 63  AEVATDKMHGVVKFDPKSGKQLKPKTSTRSYTQYFAESLTAEADADERIVAIHAAMGGGT 122
           AE A DK HGV+KFDP++GKQ K  + T+SYT  F E+L AEA+AD+ IVAIHAAMGGGT
Sbjct: 329 AERADDKYHGVLKFDPETGKQFKNISKTQSYTSCFVEALIAEAEADKDIVAIHAAMGGGT 388

Query: 123 GLNLFQKHFPERCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVAHDVDLQ 182
            LNLF+  FP RCFDVGIAEQHAVTFAAGLA EGLKPFC IYSSF+QR YDQV HDVDLQ
Sbjct: 389 MLNLFESRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCTIYSSFMQRAYDQVVHDVDLQ 448

Query: 183 KLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMAPSDETELMHMVATAAAIDDR 242
           KLPVRFAIDRAGL+GADGPTHCGAFD TFMACLPNM+VMAPSDE EL +MVATAAAIDDR
Sbjct: 449 KLPVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAAIDDR 508

Query: 243 PSCFRYPRGNGIGSILPPNNKGTPLEVGKGRVLKEGSRVALVGYGTMVQSCMEAAKVLDA 302
           PSCFRY RGNGIG  LPP NKG PL++G+GR+L++G RVAL+GYG+ VQ C+EAA +L  
Sbjct: 509 PSCFRYHRGNGIGVSLPPGNKGVPLQIGRGRILRDGERVALLGYGSAVQRCLEAASMLSE 568

Query: 303 HGISTTVADARFCKPLDGNLMRQLAREHEILITVEEGSIGGFGSHVSQF 351
            G+  TVADARFCKPLD  L+R LA+ HE+LITVEEGSIGGFGSHV QF
Sbjct: 569 RGLKITVADARFCKPLDVALIRSLAKSHEVLITVEEGSIGGFGSHVVQF 617


>AT3G21500.1 | Symbols: DXPS1 | 1-deoxy-D-xylulose 5-phosphate
           synthase 1 | chr3:7573907-7576594 REVERSE LENGTH=640
          Length = 640

 Score =  537 bits (1384), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 251/349 (71%), Positives = 292/349 (83%), Gaps = 1/349 (0%)

Query: 3   GMVSGSGACFFEELGLFYIGPVDGHDMEDLVHILKDVKALPALGPVLIHVISEKGKGYRP 62
           GM+  + +  FEELG  Y+GPVDGH+++DLV IL+ +K+   +GPVLIHV++EKG+GY  
Sbjct: 269 GMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRGYPY 328

Query: 63  AEVATDKMHGVVKFDPKSGKQLKPKTSTRSYTQYFAESLTAEADADERIVAIHAAMGGGT 122
           AE A DK H V+KFDP++GKQ K  + T+SYT  F E+L AEA+AD+ IVAIHAAMGGGT
Sbjct: 329 AERADDKYH-VLKFDPETGKQFKNISKTQSYTSCFVEALIAEAEADKDIVAIHAAMGGGT 387

Query: 123 GLNLFQKHFPERCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVAHDVDLQ 182
            LNLF+  FP RCFDVGIAEQHAVTFAAGLA EGLKPFC IYSSF+QR YDQV HDVDLQ
Sbjct: 388 MLNLFESRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCTIYSSFMQRAYDQVVHDVDLQ 447

Query: 183 KLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMAPSDETELMHMVATAAAIDDR 242
           KLPVRFAIDRAGL+GADGPTHCGAFD TFMACLPNM+VMAPSDE EL +MVATAAAIDDR
Sbjct: 448 KLPVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAAIDDR 507

Query: 243 PSCFRYPRGNGIGSILPPNNKGTPLEVGKGRVLKEGSRVALVGYGTMVQSCMEAAKVLDA 302
           PSCFRY RGNGIG  LPP NKG PL++G+GR+L++G RVAL+GYG+ VQ C+EAA +L  
Sbjct: 508 PSCFRYHRGNGIGVSLPPGNKGVPLQIGRGRILRDGERVALLGYGSAVQRCLEAASMLSE 567

Query: 303 HGISTTVADARFCKPLDGNLMRQLAREHEILITVEEGSIGGFGSHVSQF 351
            G+  TVADARFCKPLD  L+R LA+ HE+LITVEEGSIGGFGSHV QF
Sbjct: 568 RGLKITVADARFCKPLDVALIRSLAKSHEVLITVEEGSIGGFGSHVVQF 616


>AT5G11380.1 | Symbols: DXPS3 | 1-deoxy-D-xylulose 5-phosphate
           synthase 3 | chr5:3630172-3633250 FORWARD LENGTH=700
          Length = 700

 Score =  437 bits (1123), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/400 (54%), Positives = 278/400 (69%), Gaps = 22/400 (5%)

Query: 2   RGMVSGSGACFFEELGLFYIGPVDGHDMEDLVHILKDVKALPALGPVLIHVISEKGKGYR 61
           RGMV  +G+  FEELGL+YIGPVDGH++EDLV +L++V +L ++GPVL+HVI+E   G R
Sbjct: 310 RGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSLDSMGPVLVHVITE---GNR 366

Query: 62  PAEVATDKMHGVVKFDPKSGKQLKPKTSTRSYTQYFAESLTAEADADERIVAIHAAMGGG 121
            AE   + M   VK               R+Y+  F E+L  EA+ D  IV +HA M   
Sbjct: 367 DAETVKNIM---VK-------------DRRTYSDCFVEALVMEAEKDRDIVVVHAGMEMD 410

Query: 122 TGLNLFQKHFPERCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVAHDVDL 181
             L  FQ+ FP+R F+VG+AEQHAVTF+AGL++ GLKPFC I S+FLQR YDQV HDVD 
Sbjct: 411 PSLLTFQERFPDRFFNVGMAEQHAVTFSAGLSSGGLKPFCIIPSAFLQRAYDQVVHDVDR 470

Query: 182 QKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMAPSDETELMHMVATAAAIDD 241
           Q+  VRF I  AGLVG+DGP  CGAFD  FM+ LPNM+ MAP+DE EL++MVATAA + D
Sbjct: 471 QRKAVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATAAYVTD 530

Query: 242 RPSCFRYPRGNGIG-SILPPNNKGTPLEVGKGRVLKEGSRVALVGYGTMVQSCMEAAKVL 300
           RP CFR+PRG+ +  + L P   G P+E+G+GRVL EG  VAL+GYG MVQ+C+ A  +L
Sbjct: 531 RPVCFRFPRGSIVNMNYLVPT--GLPIEIGRGRVLVEGQDVALLGYGAMVQNCLHAHSLL 588

Query: 301 DAHGISTTVADARFCKPLDGNLMRQLAREHEILITVEEGSIGGFGSHVSQFXXXXXXXXX 360
              G++ TVADARFCKPLD  L+R L + H+ LITVEEG +GGFGSHV+QF         
Sbjct: 589 SKLGLNVTVADARFCKPLDIKLVRDLCQNHKFLITVEEGCVGGFGSHVAQFIALDGQLDG 648

Query: 361 XXKWRAMTLPDKYINHGTQRDQIEVAGLSSKHIAATALSL 400
             KWR + LPD YI   + R+Q+ +AGL+  HIAATALSL
Sbjct: 649 NIKWRPIVLPDGYIEEASPREQLALAGLTGHHIAATALSL 688


>AT5G11380.2 | Symbols: DXPS3 | 1-deoxy-D-xylulose 5-phosphate
           synthase 3 | chr5:3630172-3632762 FORWARD LENGTH=565
          Length = 565

 Score =  285 bits (730), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 140/251 (55%), Positives = 177/251 (70%), Gaps = 19/251 (7%)

Query: 2   RGMVSGSGACFFEELGLFYIGPVDGHDMEDLVHILKDVKALPALGPVLIHVISEKGKGYR 61
           RGMV  +G+  FEELGL+YIGPVDGH++EDLV +L++V +L ++GPVL+HVI+E   G R
Sbjct: 310 RGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSLDSMGPVLVHVITE---GNR 366

Query: 62  PAEVATDKMHGVVKFDPKSGKQLKPKTSTRSYTQYFAESLTAEADADERIVAIHAAMGGG 121
            AE   + M   VK               R+Y+  F E+L  EA+ D  IV +HA M   
Sbjct: 367 DAETVKNIM---VK-------------DRRTYSDCFVEALVMEAEKDRDIVVVHAGMEMD 410

Query: 122 TGLNLFQKHFPERCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVAHDVDL 181
             L  FQ+ FP+R F+VG+AEQHAVTF+AGL++ GLKPFC I S+FLQR YDQV HDVD 
Sbjct: 411 PSLLTFQERFPDRFFNVGMAEQHAVTFSAGLSSGGLKPFCIIPSAFLQRAYDQVVHDVDR 470

Query: 182 QKLPVRFAIDRAGLVGADGPTHCGAFDTTFMACLPNMVVMAPSDETELMHMVATAAAIDD 241
           Q+  VRF I  AGLVG+DGP  CGAFD  FM+ LPNM+ MAP+DE EL++MVATAA + D
Sbjct: 471 QRKAVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATAAYVTD 530

Query: 242 RPSCFRYPRGN 252
           RP CFR+PRG+
Sbjct: 531 RPVCFRFPRGS 541


>AT5G50850.1 | Symbols: MAB1 | Transketolase family protein |
           chr5:20689671-20692976 FORWARD LENGTH=363
          Length = 363

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 107/260 (41%), Gaps = 26/260 (10%)

Query: 100 SLTAEADADERIVAIHAAMGGGTGL-----NLFQKHFPERCFDVGIAEQHAVTFAAGLAA 154
           ++  E  AD ++  +   +G   G       L +K+ PER +D  I E        G A 
Sbjct: 45  AIDEEMSADPKVFVMGEEVGQYQGAYKITKGLLEKYGPERVYDTPITEAGFTGIGVGAAY 104

Query: 155 EGLKPFCAIYS-SFLQRGYDQVAHDVDLQK--------LPVRFAIDRAGLVGADGPTHCG 205
            GLKP     + +F  +  D + +              +P+ F        G  G  H  
Sbjct: 105 AGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGV-GAQHSQ 163

Query: 206 AFDTTFMACLPNMVVMAPSDETELMHMVATAAAIDDRPSCFRYPRGNGI--GSILPPNNK 263
            +   + A +P + V+AP    +   ++  AA  D  P  F     N +  G   P + +
Sbjct: 164 CY-AAWYASVPGLKVLAPYSAEDARGLL-KAAIRDPDPVVFL---ENELLYGESFPISEE 218

Query: 264 GTP----LEVGKGRVLKEGSRVALVGYGTMVQSCMEAAKVLDAHGISTTVADARFCKPLD 319
                  L +GK ++ +EG  V +V +  MV   ++AA+ L   GIS  V + R  +PLD
Sbjct: 219 ALDSSFCLPIGKAKIEREGKDVTIVTFSKMVGFALKAAEKLAEEGISAEVINLRSIRPLD 278

Query: 320 GNLMRQLAREHEILITVEEG 339
              +    R+   L+TVEEG
Sbjct: 279 RATINASVRKTSRLVTVEEG 298


>AT1G55510.1 | Symbols: BCDH BETA1 | branched-chain alpha-keto acid
           decarboxylase E1 beta subunit | chr1:20723482-20725505
           FORWARD LENGTH=352
          Length = 352

 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 126/301 (41%), Gaps = 39/301 (12%)

Query: 71  HGVVKFDPKSGKQLKPKTSTRSYTQYFAESLTAEADADERIVAIHAAMGGG------TGL 124
           HG  +   ++GK L   ++         ++L    D D R       +G G      TGL
Sbjct: 19  HGARRVSTETGKPLNLYSAIN-------QALHIALDTDPRSYVFGEDVGFGGVFRCTTGL 71

Query: 125 NLFQKHFPERCFDVGIAEQHAVTFAAGLAAEGLKPFCAI-YSSFLQRGYDQVAHDVDLQK 183
              ++    R F+  + EQ  V F  GLAA G +    I ++ ++   +DQ+ ++    +
Sbjct: 72  A--ERFGKNRVFNTPLCEQGIVGFGIGLAAMGNRAIVEIQFADYIYPAFDQIVNEAAKFR 129

Query: 184 LPVRFAIDRAGL--------VGADGPTHCGAFDTTFMACLPNMVVMAPSDETELMHMVAT 235
                  +  GL        VG  G  H  +    F   +P + V+ P    E   ++ +
Sbjct: 130 YRSGNQFNCGGLTIRAPYGAVGHGGHYHSQS-PEAFFCHVPGIKVVIPRSPREAKGLLLS 188

Query: 236 AAAIDDRPSCFRYPRGNGIGSI--LPPNNKGTPLEVGKGRVLKEGSRVALVGYG----TM 289
               D  P  F  P+     ++  +P ++   PL   +  V++EG+ + LVG+G     M
Sbjct: 189 CIR-DPNPVVFFEPKWLYRQAVEEVPEHDYMIPLS--EAEVIREGNDITLVGWGAQLTVM 245

Query: 290 VQSCMEAAKVLDAHGISTTVADARFCKPLDGNLMR-QLAREHEILITVEEGSIGGFGSHV 348
            Q+C++A K     GIS  + D +   P D   +   + +   +LI+ E    GGFG+ +
Sbjct: 246 EQACLDAEK----EGISCELIDLKTLLPWDKETVEASVKKTGRLLISHEAPVTGGFGAEI 301

Query: 349 S 349
           S
Sbjct: 302 S 302


>AT3G13450.1 | Symbols: DIN4 | Transketolase family protein |
           chr3:4382340-4384295 REVERSE LENGTH=358
          Length = 358

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 130/313 (41%), Gaps = 43/313 (13%)

Query: 57  GKGYRPAEVATDKMHGVVKFDPKSGKQLKPKTSTRSYTQYFAESLTAEADADERIVAIHA 116
           G GYR        M   V+   +SGK +   ++        A  +  E D    +     
Sbjct: 19  GHGYR--------MLSTVENVSESGKSMNLYSAINQ-----ALHIALETDPRSYVFGEDV 65

Query: 117 AMGG----GTGLNLFQKHFPERCFDVGIAEQHAVTFAAGLAAEGLKPFCAI-YSSFLQRG 171
             GG     TGL   ++    R F+  + EQ  V F  GLAA G +    I ++ ++   
Sbjct: 66  GFGGVFRCTTGLA--ERFGKSRVFNTPLCEQGIVGFGIGLAAMGNRVIAEIQFADYIFPA 123

Query: 172 YDQVAHDVDLQKLPVRFAIDRAGL--------VGADGPTHCGAFDTTFMACLPNMVVMAP 223
           +DQ+ ++    +       +  GL        VG  G  H  +    F   +P + V+ P
Sbjct: 124 FDQIVNEAAKFRYRSGNQFNCGGLTIRAPYGAVGHGGHYHSQS-PEAFFCHVPGIKVVIP 182

Query: 224 SDETELMHMVATAAAIDDRPSCFRYPRGNGIGSI--LPPNNKGTPLEVGKGRVLKEGSRV 281
               E   ++ ++   D  P  F  P+     ++  +P ++   PL   +  V++EGS +
Sbjct: 183 RSPREAKGLLLSSIR-DPNPVVFFEPKWLYRQAVEDVPEDDYMIPLS--EAEVMREGSDI 239

Query: 282 ALVGYGT----MVQSCMEAAKVLDAHGISTTVADARFCKPLDGNLMRQLAREH-EILITV 336
            LVG+G     M Q+C++A    +  GIS  + D +   P D  ++    R+   +LI+ 
Sbjct: 240 TLVGWGAQLTIMEQACLDA----ENEGISCELIDLKTLIPWDKEIVETSVRKTGRLLISH 295

Query: 337 EEGSIGGFGSHVS 349
           E    GGFG+ ++
Sbjct: 296 EAPVTGGFGAEIA 308