Miyakogusa Predicted Gene

Lj4g3v2023910.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2023910.1 tr|Q6K9C2|Q6K9C2_ORYSJ Os02g0610700 protein
OS=Oryza sativa subsp. japonica GN=OJ1476_F05.21-1 PE=4 ,51.28,2e-19,
,CUFF.50168.1
         (145 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G28025.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   133   5e-32
AT4G28025.2 | Symbols:  | unknown protein. | chr4:13935836-13937...   132   7e-32

>AT4G28025.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast
           thylakoid membrane; EXPRESSED IN: 23 plant structures;
           EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits
           to 17322 proteins in 780 species: Archae - 12; Bacteria
           - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr4:13935836-13937367 REVERSE LENGTH=157
          Length = 157

 Score =  133 bits (334), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/122 (55%), Positives = 86/122 (70%), Gaps = 1/122 (0%)

Query: 22  SLTVVKWGWKREQDVSIVSNTPRSQSFRVLATASNTKVVSSGKAGSKNDVIMVDPVEAKQ 81
           S ++VK G +R QD  +V N  R    RVLA  + +     GKA  K +VIMVDP+EAK+
Sbjct: 33  SSSLVK-GLRRHQDAKLVGNRARVGVVRVLANPNVSPPPPPGKAKVKKEVIMVDPLEAKR 91

Query: 82  LAAKQMERIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKNIMTQLQDYFDAIIH 141
           LA+KQME IK +EK +RRR+IEAINGAWA+IGL  GLVIE QTGK I+ QL  Y+ A++H
Sbjct: 92  LASKQMEEIKGREKQQRRREIEAINGAWAIIGLMIGLVIEAQTGKGILAQLAGYWSAVVH 151

Query: 142 FF 143
            F
Sbjct: 152 LF 153


>AT4G28025.2 | Symbols:  | unknown protein. | chr4:13935836-13937367
           REVERSE LENGTH=148
          Length = 148

 Score =  132 bits (333), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 65/115 (56%), Positives = 81/115 (70%)

Query: 29  GWKREQDVSIVSNTPRSQSFRVLATASNTKVVSSGKAGSKNDVIMVDPVEAKQLAAKQME 88
           G +R QD  +V N  R    RVLA  + +     GKA  K +VIMVDP+EAK+LA+KQME
Sbjct: 30  GLRRHQDAKLVGNRARVGVVRVLANPNVSPPPPPGKAKVKKEVIMVDPLEAKRLASKQME 89

Query: 89  RIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKNIMTQLQDYFDAIIHFF 143
            IK +EK +RRR+IEAINGAWA+IGL  GLVIE QTGK I+ QL  Y+ A++H F
Sbjct: 90  EIKGREKQQRRREIEAINGAWAIIGLMIGLVIEAQTGKGILAQLAGYWSAVVHLF 144