Miyakogusa Predicted Gene

Lj4g3v2023890.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2023890.1 tr|B9IM52|B9IM52_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_578659 PE=4
SV=1,50,0.00000000009,seg,NULL,CUFF.50166.1
         (303 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G16850.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   134   7e-32

>AT4G16850.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G31130.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr4:9480699-9481640 FORWARD LENGTH=313
          Length = 313

 Score =  134 bits (337), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 89/254 (35%), Positives = 131/254 (51%), Gaps = 21/254 (8%)

Query: 61  LTARIHRLESLAHHAPTRFEARHVWRESRHDASSLLRVKALFAIPXXXXXXXXXXXXVHS 120
           L   + RLE+LA+   TRFEAR +W+ESR DA SLL +K  + +P            + S
Sbjct: 56  LKNHVFRLEALANVVHTRFEARQIWQESREDAVSLLHLKFRYFVPSFILSCMASITVITS 115

Query: 121 TLTP----APTLHSAASALKHHSMRLSVTTIYIYALLLAFSPIPRAISALTG-SPLLVFL 175
           T        P+L S+ +++K   MR++ T+I +Y LL  +SPI   +SAL G +P L +L
Sbjct: 116 TSFSHQGINPSLKSSFASVKSSWMRVTATSIIVYGLLFLYSPISMFLSALVGYTPTLRYL 175

Query: 176 IGS---GLEVYLMXXXXXXXXXXXXEERFGWDAIRVGSGLMEGNRVCGWVXXXXXXXXXX 232
           I     G+EVY+M            EER+G+DAI+ G+ LM+G R+ G            
Sbjct: 176 ITILFLGVEVYIMAITGLGFVVSVLEERYGFDAIKEGTALMKGRRITGLALAGVFVFLSS 235

Query: 233 XXXXKVERL---MDGEDSIGVEDKAV----------LIVSYGFMVLWSYVIMTVFYCHCR 279
                +E+L   +D + S G   ++V          L+  YG  V+ SYV++TVFYC CR
Sbjct: 236 FIGHGMEKLAKELDMDLSSGSWWRSVVVAGGWDGWKLVCMYGAEVVLSYVVITVFYCECR 295

Query: 280 KQHPVKEAQPDPDE 293
           K+H    A    +E
Sbjct: 296 KRHGNSYAIVADEE 309