Miyakogusa Predicted Gene

Lj4g3v2021650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2021650.1 tr|I4DJI4|I4DJI4_9NEOP Cytochrome c
oxidase,-subunit VIb OS=Papilio xuthus PE=4
SV=1,57.53,3e-19,COX6B,Cytochrome c oxidase, subunit VIb; CYTOCHROME C
OXIDASE POLYPEPTIDE VIB,NULL; Cytochrome c oxi,CUFF.50153.1
         (77 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57815.1 | Symbols:  | Cytochrome c oxidase, subunit Vib fami...   143   2e-35
AT1G22450.1 | Symbols: COX6B, ATCOX6B2 | cytochrome C oxidase 6B...   142   4e-35
AT4G28060.1 | Symbols:  | Cytochrome c oxidase, subunit Vib fami...   142   6e-35
AT1G32710.1 | Symbols:  | Cytochrome c oxidase, subunit Vib fami...    66   4e-12

>AT5G57815.1 | Symbols:  | Cytochrome c oxidase, subunit Vib
          family protein | chr5:23426753-23427637 FORWARD
          LENGTH=78
          Length = 78

 Score =  143 bits (361), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 65/75 (86%), Positives = 69/75 (92%)

Query: 3  EIELKTAPVDFRFPTTNQTRHCFTRYIEFHRCLAVKGEESGECERFAKYYRSLCPGEWVE 62
          EIELKTAP DFRFPTTNQTRHCFTRYIEFHRC   KGEES +CERFAKYYR+LCPGEWV+
Sbjct: 4  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVD 63

Query: 63 KWNEQRGNGTFPGPL 77
          KWNEQR +GTFPGPL
Sbjct: 64 KWNEQRESGTFPGPL 78


>AT1G22450.1 | Symbols: COX6B, ATCOX6B2 | cytochrome C oxidase 6B |
           chr1:7925447-7926918 FORWARD LENGTH=191
          Length = 191

 Score =  142 bits (358), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 57/75 (76%), Positives = 70/75 (93%)

Query: 3   EIELKTAPVDFRFPTTNQTRHCFTRYIEFHRCLAVKGEESGECERFAKYYRSLCPGEWVE 62
           EI+L+TAP DFRFPTTNQTRHCFTRY+E+HRC+A KG+++ EC++FAK+YRSLCP EWV+
Sbjct: 116 EIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVD 175

Query: 63  KWNEQRGNGTFPGPL 77
           +WNEQR NGTFPGPL
Sbjct: 176 RWNEQRENGTFPGPL 190


>AT4G28060.1 | Symbols:  | Cytochrome c oxidase, subunit Vib
          family protein | chr4:13944018-13945602 REVERSE
          LENGTH=78
          Length = 78

 Score =  142 bits (357), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 64/75 (85%), Positives = 68/75 (90%)

Query: 3  EIELKTAPVDFRFPTTNQTRHCFTRYIEFHRCLAVKGEESGECERFAKYYRSLCPGEWVE 62
          EIELKTAP DFRFPTTNQTRHCFTRYIEFHRC   KGE++ ECERFAKYYR+LCPGEWV+
Sbjct: 4  EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVD 63

Query: 63 KWNEQRGNGTFPGPL 77
          KWNEQR  GTFPGPL
Sbjct: 64 KWNEQRETGTFPGPL 78


>AT1G32710.1 | Symbols:  | Cytochrome c oxidase, subunit Vib family
           protein | chr1:11833113-11833706 FORWARD LENGTH=134
          Length = 134

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 37/55 (67%)

Query: 9   APVDFRFPTTNQTRHCFTRYIEFHRCLAVKGEESGECERFAKYYRSLCPGEWVEK 63
           A V+ RFP TN+TRHCF R++++H+C+   G ++ +C     Y RS+CP E V K
Sbjct: 59  AAVEERFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELVSK 113