Miyakogusa Predicted Gene

Lj4g3v2018290.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2018290.1 tr|D3BIG1|D3BIG1_POLPA Transmembrane protein
OS=Polysphondylium pallidum GN=tmem208 PE=4 SV=1,34.5,3e-19,SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,Protein of unknown function DUF788,
TMEM208; seg,NULL; DU,CUFF.50107.1
         (174 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G23940.1 | Symbols:  | Protein of unknown function (DUF788) |...   231   2e-61
AT4G30500.1 | Symbols:  | Protein of unknown function (DUF788) |...   211   3e-55

>AT2G23940.1 | Symbols:  | Protein of unknown function (DUF788) |
           chr2:10184199-10185097 FORWARD LENGTH=173
          Length = 173

 Score =  231 bits (588), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 109/174 (62%), Positives = 128/174 (73%), Gaps = 1/174 (0%)

Query: 1   MAKQGAKKRKDENARHMARLRLXXXXXXXXXXXXRMFFYYSTFTWKHWIGLVVTSLAYYV 60
           MA QGAKKRK+ENA+HMA+LR             RM  +YS+FTWKHWIGLV+TSLAY  
Sbjct: 1   MANQGAKKRKEENAKHMAKLRRIIIASNAVYFVVRMLIFYSSFTWKHWIGLVITSLAYAF 60

Query: 61  PYQQLDKMATPSYAEDGELLDGGFDMATGGVCGYLHDIIYITCFVQVASIISGKFWYTYL 120
           PY+QLD+MA PS  +DGEL+DGGFDM TGG+CGYLHD+IYITCFVQ+ASII+GKFWYTYL
Sbjct: 61  PYKQLDQMAKPSVTDDGELIDGGFDMTTGGICGYLHDVIYITCFVQLASIITGKFWYTYL 120

Query: 121 VIPAFGAYQSFGLIKGFLPQGSSEESYXXXXXXXXXXXXXXXASRPKFVKTRTR 174
           VIPAFG Y++ GLI+GF+ QG SE                  ASR + VKTRTR
Sbjct: 121 VIPAFGVYKASGLIRGFMSQG-SEGGVEDEKSRKKREKMERKASRGQVVKTRTR 173


>AT4G30500.1 | Symbols:  | Protein of unknown function (DUF788) |
           chr4:14903558-14904764 FORWARD LENGTH=173
          Length = 173

 Score =  211 bits (536), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/174 (59%), Positives = 122/174 (70%), Gaps = 1/174 (0%)

Query: 1   MAKQGAKKRKDENARHMARLRLXXXXXXXXXXXXRMFFYYSTFTWKHWIGLVVTSLAYYV 60
           MA QGAKKRKDENARHMA+LRL            R+   +S+ TWK+WIGLV+TSL Y +
Sbjct: 1   MANQGAKKRKDENARHMAKLRLIMILCNILYVLVRVIISHSSHTWKNWIGLVLTSLGYGI 60

Query: 61  PYQQLDKMATPSYAEDGELLDGGFDMATGGVCGYLHDIIYITCFVQVASIISGKFWYTYL 120
           PY+ L +MA PS ++ GELLDGGFDM+T G+CGYLHD++YITCFVQV SIISGKFWY YL
Sbjct: 61  PYKLLHQMAKPSVSDAGELLDGGFDMSTPGMCGYLHDVLYITCFVQVGSIISGKFWYAYL 120

Query: 121 VIPAFGAYQSFGLIKGFLPQGSSEESYXXXXXXXXXXXXXXXASRPKFVKTRTR 174
           VIPAFGAY++ GLIKG L  G SE                  ASR + VKTR+R
Sbjct: 121 VIPAFGAYKASGLIKGLLSHG-SEGGVEDEKTRKKREKMERKASRGQVVKTRSR 173