Miyakogusa Predicted Gene

Lj4g3v2014120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2014120.1 tr|A9STJ2|A9STJ2_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_83795
,34.01,0.000000000000003,seg,NULL; SUBFAMILY NOT NAMED,NULL;
NUCLEOPORIN NUP43,NULL,CUFF.50097.1
         (179 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G30840.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   112   1e-25

>AT4G30840.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr4:15017831-15019709 REVERSE LENGTH=361
          Length = 361

 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/180 (40%), Positives = 90/180 (50%), Gaps = 17/180 (9%)

Query: 11  RIHRFPQYKYIDAVRWLPLVSAFDRXXXXXXXXXXXXXXXIEIHSFKPNPLS-------F 63
           ++HR PQ KY+D VRWLP  SA +R               IEI S  PNP          
Sbjct: 9   QVHRIPQSKYVDGVRWLPQASALNRFFATASYDADCDSSSIEIQSLDPNPRGNHNTNPLI 68

Query: 64  EPQSSWTPPSRVSSLKAAQFLQ-----KTVIAASTSSGSLHFLFSDPADATLESEVSVPE 118
           E  SSWT PSRVSSL+ A         K +++A+TSSGSLH L  D  +     E    E
Sbjct: 69  ESLSSWTSPSRVSSLEVAGNGGGGGSFKPMVSAATSSGSLHVLMIDLVEGAAIEEFYAAE 128

Query: 119 G-KLHSVPKSCVDLMDGGVECVTAGEDGRVN---LVTAYGVRYRWLWVWSSMVGSEEAGW 174
           G + H      VD  +GG ECVT GEDGRVN   +V   G+RYR ++  + +V      W
Sbjct: 129 GERFHVGRVEGVDWREGG-ECVTVGEDGRVNVVKIVNGEGLRYRKVFDGNGLVAYRAVKW 187