Miyakogusa Predicted Gene

Lj4g3v2003030.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2003030.1 tr|A9TWE0|A9TWE0_PHYPA 50S ribosomal protein L35
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAF,63.51,1e-17,rpmI_bact: ribosomal protein L35,Ribosomal
protein L35, non-mitochondrial; RIBOSOMALL35,Ribosomal pr,CUFF.50086.1
         (148 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G24090.1 | Symbols:  | Ribosomal protein L35 | chr2:10242038-...   145   1e-35

>AT2G24090.1 | Symbols:  | Ribosomal protein L35 |
           chr2:10242038-10243416 FORWARD LENGTH=145
          Length = 145

 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/98 (75%), Positives = 81/98 (82%), Gaps = 3/98 (3%)

Query: 54  IFQQKLCTVTPPSSR---SLTIVAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLQ 110
           +   K+ TV  P+S+   S T+ A KGYKMKTHKASAKRFRVTG+GKIVRRR+GKQHLL 
Sbjct: 48  VLPLKISTVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLA 107

Query: 111 KKNTKRKLRLSKMHPVNRSDYDNVIGALPYLKVNRNAT 148
           KKN KRKLRLSKM  VNRSDYDNVIGALPYLKVNR AT
Sbjct: 108 KKNNKRKLRLSKMTEVNRSDYDNVIGALPYLKVNRKAT 145