Miyakogusa Predicted Gene

Lj4g3v2003010.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2003010.1 Non Chatacterized Hit- tr|I1IDE3|I1IDE3_BRADI
Uncharacterized protein OS=Brachypodium distachyon GN=,37.85,2e-18,
,gene.g55982.t1.1
         (174 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G30780.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    94   6e-20
AT2G24100.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    86   2e-17

>AT4G30780.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT2G24100.1); Has 109 Blast hits to 109 proteins
           in 18 species: Archae - 0; Bacteria - 0; Metazoa - 1;
           Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes -
           13 (source: NCBI BLink). | chr4:14990523-14992855
           FORWARD LENGTH=589
          Length = 589

 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 70/173 (40%), Positives = 92/173 (53%), Gaps = 23/173 (13%)

Query: 1   MQMPGLRHSMSVSDFIGHIEHCLSEEMISGNPSFSDRISEYQEMLDDISQHLLNDNQATE 60
           +++PGL  SMSVSDF+G     LS+     +P       E+ E  + + Q LL+DN   E
Sbjct: 434 IKVPGLHQSMSVSDFVG----LLSDSAGGSHP-------EHMEKFEIMKQQLLSDNIQFE 482

Query: 61  ASSDEKSLMTRVNSLRSLLQKDPAAVQNPHGKASAVEGPEDGGNIQGGSHDHESMQDNRI 120
           A  DEKSLM RVNSL +LL KDP    N         G +     +G   D+ +  +N  
Sbjct: 483 AP-DEKSLMPRVNSLFNLLYKDPNVAANSQLNTEMSVGLK--SEPKGIVSDNNNNNNNNN 539

Query: 121 EIDVKAADEDLRDVSGGKQAPGMTRKDSFAELLFNLPRIASLPKFLYNISEED 173
            +          D +   +  GM RKDSF++LL +LPRI SLPKFL NISEED
Sbjct: 540 RV---------LDTASSSKPQGMLRKDSFSDLLLHLPRITSLPKFLSNISEED 583


>AT2G24100.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins
           in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes -
           6 (source: NCBI BLink). | chr2:10244921-10246715 FORWARD
           LENGTH=466
          Length = 466

 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 95/173 (54%), Gaps = 33/173 (19%)

Query: 1   MQMPGLRHSMSVSDFIGHIEHCLSEEMISGNPSFSDRISEYQEMLDDISQHLLNDNQATE 60
           ++MPGL  S+S++DF+  +               SD+  E  +  +++ Q LL+DN  T+
Sbjct: 327 IKMPGLHQSISMNDFLTFL---------------SDQACENNQEFEEMKQLLLSDNTQTD 371

Query: 61  ASSDEKSLMTRVNSLRSLLQKDPAAVQNPHGKASAVEGPEDGGNIQGGSHDHESMQDNRI 120
            S DEKS+M++VNS  +LLQ    +  N       +E   D   + G  ++    +  + 
Sbjct: 372 PS-DEKSVMSKVNSFCNLLQSAANSQLN-------IET-ADTERVVGVDNNRHMPEGGKR 422

Query: 121 EIDVKAADEDLRDVSGGKQAPGMTRKDSFAELLFNLPRIASLPKFLYNISEED 173
            +D  ++ + L+         GM+RKDSF++LL +LPRI SLPKFL+NISEED
Sbjct: 423 VVDPASSSKPLQ---------GMSRKDSFSDLLVHLPRITSLPKFLFNISEED 466