Miyakogusa Predicted Gene

Lj4g3v2000890.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2000890.1 tr|D7U1D4|D7U1D4_VITVI Translation initiation
factor IF-3 OS=Vitis vinifera GN=VIT_11s0037g00520 PE=,69.96,0,no
description,Translation initiation factor 3, N-terminal; no
description,Translation initiation fa,CUFF.50075.1
         (250 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G30690.1 | Symbols:  | Translation initiation factor 3 protei...   249   1e-66
AT2G24060.1 | Symbols:  | Translation initiation factor 3 protei...   243   1e-64
AT4G30690.2 | Symbols:  | Translation initiation factor 3 protei...   223   1e-58
AT1G34360.1 | Symbols:  | translation initiation factor 3 (IF-3)...    49   4e-06

>AT4G30690.1 | Symbols:  | Translation initiation factor 3 protein |
           chr4:14960742-14962328 FORWARD LENGTH=281
          Length = 281

 Score =  249 bits (635), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 118/177 (66%), Positives = 150/177 (84%), Gaps = 2/177 (1%)

Query: 74  KRQAQAESEDEQALDLSKLKSATVRLIDEKQNMVGVVSRSQAIQMADDAQLDLVIVSPEA 133
           +R  Q ESED+ +LD+S ++SATVRLID++QNM+G+VS+ +A++ A+DA+LDLVI+SP+A
Sbjct: 73  RRGRQKESEDDDSLDISAIRSATVRLIDDQQNMIGLVSKEEAVRRAEDAELDLVILSPDA 132

Query: 134 DPPVVKIMDYSXXXXXXXXXXXXXXXXSAASRMDLKELKMGYNIDQHDYSVRLRAARKFL 193
           DPPVV++MDYS                +  +RMDLKELKMGYNIDQHDYSVR+RAARKFL
Sbjct: 133 DPPVVRMMDYSKYRYEQQKRKKEQQKKT--TRMDLKELKMGYNIDQHDYSVRMRAARKFL 190

Query: 194 TDGDKVKVIVNLKGRENEFRNIAIELIKRFQNDVGELGTEEAKSFRDRNIFILLVPN 250
            DGDKVKVIVN+KGRENEFRNIAIEL++RFQ ++GELGTEE+K+FRDRN+FI+LVPN
Sbjct: 191 QDGDKVKVIVNMKGRENEFRNIAIELLRRFQTEIGELGTEESKNFRDRNLFIVLVPN 247


>AT2G24060.1 | Symbols:  | Translation initiation factor 3 protein |
           chr2:10229453-10231390 FORWARD LENGTH=312
          Length = 312

 Score =  243 bits (619), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 117/177 (66%), Positives = 148/177 (83%), Gaps = 2/177 (1%)

Query: 74  KRQAQAESEDEQALDLSKLKSATVRLIDEKQNMVGVVSRSQAIQMADDAQLDLVIVSPEA 133
           +R    E+E ++ALD+S ++SATVRLID +QNM+G+VS+ +A++MADDA+LDLVI+SP+A
Sbjct: 77  RRGRPKEAEIDEALDISSIRSATVRLIDGQQNMLGLVSKDEAVRMADDAELDLVILSPDA 136

Query: 134 DPPVVKIMDYSXXXXXXXXXXXXXXXXSAASRMDLKELKMGYNIDQHDYSVRLRAARKFL 193
           DPPVVK+MDYS                +  +RMDLKELKMGYNIDQHDYSVRLRAA+KFL
Sbjct: 137 DPPVVKMMDYSKYRYEQQKRKKDQQKKT--TRMDLKELKMGYNIDQHDYSVRLRAAQKFL 194

Query: 194 TDGDKVKVIVNLKGRENEFRNIAIELIKRFQNDVGELGTEEAKSFRDRNIFILLVPN 250
            DGDKVKVIV++KGRENEFRNIAIEL++RFQ ++GEL TEE+K+FRDRN+FI+LVPN
Sbjct: 195 QDGDKVKVIVSMKGRENEFRNIAIELLRRFQTEIGELATEESKNFRDRNMFIILVPN 251


>AT4G30690.2 | Symbols:  | Translation initiation factor 3 protein |
           chr4:14960742-14962328 FORWARD LENGTH=253
          Length = 253

 Score =  223 bits (567), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/177 (61%), Positives = 138/177 (77%), Gaps = 30/177 (16%)

Query: 74  KRQAQAESEDEQALDLSKLKSATVRLIDEKQNMVGVVSRSQAIQMADDAQLDLVIVSPEA 133
           +R  Q ESED+ +LD+S ++SATVRLID++QNM+G+VS+ +A++ A+DA+LDLVI+SP+A
Sbjct: 73  RRGRQKESEDDDSLDISAIRSATVRLIDDQQNMIGLVSKEEAVRRAEDAELDLVILSPDA 132

Query: 134 DPPVVKIMDYSXXXXXXXXXXXXXXXXSAASRMDLKELKMGYNIDQHDYSVRLRAARKFL 193
           DPPVV++MDYS                              YNIDQHDYSVR+RAARKFL
Sbjct: 133 DPPVVRMMDYS------------------------------YNIDQHDYSVRMRAARKFL 162

Query: 194 TDGDKVKVIVNLKGRENEFRNIAIELIKRFQNDVGELGTEEAKSFRDRNIFILLVPN 250
            DGDKVKVIVN+KGRENEFRNIAIEL++RFQ ++GELGTEE+K+FRDRN+FI+LVPN
Sbjct: 163 QDGDKVKVIVNMKGRENEFRNIAIELLRRFQTEIGELGTEESKNFRDRNLFIVLVPN 219


>AT1G34360.1 | Symbols:  | translation initiation factor 3 (IF-3)
           family protein | chr1:12542986-12546025 FORWARD
           LENGTH=520
          Length = 520

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 6/133 (4%)

Query: 73  RKRQAQAESEDEQALDLSKLKSATVRLIDEKQNMVGVVSRSQAIQMADDAQLDLVIVSPE 132
           RK++A+ +S+  +  +  K+    VRL+ E+ + V  VS  +A++ A + Q DLV V  +
Sbjct: 73  RKKEAEVDSDGPRLNE--KITGDYVRLVSEEGHCV--VSLREALRRAKELQCDLVEVQRD 128

Query: 133 ADPPVVKIMDYSXX--XXXXXXXXXXXXXXSAASRMDLKELKMGYNIDQHDYSVRLRAAR 190
           A PPV KI+ YS                  + A R D+KE++    I+  D   +   A 
Sbjct: 129 AKPPVCKIVKYSLELYKKAKVGKERAKAKRAEAIRPDIKEIRFTPKIEAKDLKFKSDQAL 188

Query: 191 KFLTDGDKVKVIV 203
           K +  G +VK + 
Sbjct: 189 KLMESGYRVKCLA 201