Miyakogusa Predicted Gene
- Lj4g3v1987840.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1987840.1 tr|D7M2J7|D7M2J7_ARALL F-box family protein
OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAFT_352454,32.26,8e-19,RNI-like,NULL; no description,NULL;
LRR_6,NULL; LRR_1,Leucine-rich repeat; Leucine-rich repeat - CC
,gene.g55958.t1.1
(268 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G57900.1 | Symbols: SKIP1 | SKP1 interacting partner 1 | chr5... 333 7e-92
AT4G30640.1 | Symbols: | RNI-like superfamily protein | chr4:14... 263 7e-71
AT4G05460.1 | Symbols: | RNI-like superfamily protein | chr4:27... 85 7e-17
AT4G03630.1 | Symbols: | RNI-like superfamily protein | chr4:16... 80 1e-15
AT4G05497.1 | Symbols: | RNI-like superfamily protein | chr4:27... 79 4e-15
AT5G52480.1 | Symbols: | RNI-like superfamily protein | chr5:21... 76 3e-14
AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:27... 74 1e-13
AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:27... 74 1e-13
AT4G15475.1 | Symbols: | F-box/RNI-like superfamily protein | c... 70 2e-12
AT4G08980.5 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 69 5e-12
AT4G08980.4 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 69 5e-12
AT4G08980.2 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 69 5e-12
AT4G08980.3 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 69 5e-12
AT4G08980.1 | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-... 69 5e-12
AT5G52480.2 | Symbols: | RNI-like superfamily protein | chr5:21... 66 3e-11
AT5G25350.1 | Symbols: EBF2 | EIN3-binding F box protein 2 | chr... 64 1e-10
AT5G23340.1 | Symbols: | RNI-like superfamily protein | chr5:78... 62 3e-10
AT1G80630.1 | Symbols: | RNI-like superfamily protein | chr1:30... 61 7e-10
AT4G05490.1 | Symbols: | RNI-like superfamily protein | chr4:27... 61 8e-10
AT2G25490.1 | Symbols: EBF1, FBL6 | EIN3-binding F box protein 1... 60 2e-09
AT5G27920.1 | Symbols: | F-box family protein | chr5:9942063-99... 56 2e-08
AT1G21410.1 | Symbols: SKP2A | F-box/RNI-like superfamily protei... 55 3e-08
AT4G33210.1 | Symbols: SLOMO | F-box family protein | chr4:16015... 54 9e-08
AT3G58530.1 | Symbols: | RNI-like superfamily protein | chr3:21... 54 9e-08
AT1G77000.2 | Symbols: SKP2B | RNI-like superfamily protein | ch... 53 2e-07
AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily pr... 53 2e-07
AT5G01720.1 | Symbols: | RNI-like superfamily protein | chr5:26... 51 7e-07
AT5G67250.1 | Symbols: SKIP2, VFB4 | SKP1/ASK1-interacting prote... 51 1e-06
AT3G60350.1 | Symbols: ARABIDILLO-2, ARABIDILLO2 | ARABIDILLO-2 ... 49 2e-06
AT5G21900.1 | Symbols: | RNI-like superfamily protein | chr5:72... 49 4e-06
AT2G44900.1 | Symbols: ARABIDILLO-1, ARABIDILLO1 | ARABIDILLO-1 ... 48 7e-06
>AT5G57900.1 | Symbols: SKIP1 | SKP1 interacting partner 1 |
chr5:23449916-23450915 REVERSE LENGTH=300
Length = 300
Score = 333 bits (854), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 160/270 (59%), Positives = 206/270 (76%), Gaps = 4/270 (1%)
Query: 1 MLVCKSWFSAFKEPSLHSVFNLDPLFDSPRELPRWWSPEFEAKIDSMLRSVVQWTHIFLT 60
M V KSW + ++P L S+F+L+P FDS E WSPEFE K+D MLRSVV W+ LT
Sbjct: 33 MFVQKSWLTVCRDPYLWSIFDLEPWFDSYPESTHLWSPEFEQKVDLMLRSVVDWSEGGLT 92
Query: 61 QIRIRHCSDRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDVT 120
+IR+RHCSD +L+ A+RCPNL+VL+IRS P+VTD S+++IA C L+ELDISYC++++
Sbjct: 93 KIRVRHCSDHALSYAADRCPNLQVLAIRSSPNVTDASMTKIAFRCRSLKELDISYCHEIS 152
Query: 121 HKSLALIGRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACPQDGDTEAAAIARSMPHL 180
H +L +IGRNCPNL++LKRNLM+W S+H+G VP EYL+ACPQDGDTEA AI + M +L
Sbjct: 153 HDTLVMIGRNCPNLRILKRNLMDW--SSRHIGSVPTEYLDACPQDGDTEADAIGKHMINL 210
Query: 181 EWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGCANLTSRDIANASSSLAHLKDIKKPNFY 240
E LEI+FS+LS KGL IC+ CP LE+LDL GC +L+SRDI + S L LK++KKP+ Y
Sbjct: 211 EHLEIQFSRLSVKGLASICEGCPKLEYLDLFGCVHLSSRDITSNVSRLKWLKEVKKPDVY 270
Query: 241 IPRS--VFHTERYGHWQLYDERFQTDVFRI 268
+PRS V TERYGHW+LYDERF RI
Sbjct: 271 VPRSGDVAQTERYGHWRLYDERFDIQAMRI 300
>AT4G30640.1 | Symbols: | RNI-like superfamily protein |
chr4:14952670-14953682 FORWARD LENGTH=301
Length = 301
Score = 263 bits (673), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 130/253 (51%), Positives = 179/253 (70%)
Query: 1 MLVCKSWFSAFKEPSLHSVFNLDPLFDSPRELPRWWSPEFEAKIDSMLRSVVQWTHIFLT 60
MLV K+W +A +P+L+++F+L+ F S E WW+PEFE K+DS LRSVV + LT
Sbjct: 45 MLVSKNWMNACYDPTLNTIFDLETRFLSFPESINWWTPEFEDKVDSFLRSVVDRSEGGLT 104
Query: 61 QIRIRHCSDRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDVT 120
+IRIRHC++RSL+ AERCPNLEVL I++CP+VTD S+ +IA+NCP LRELDISY Y +T
Sbjct: 105 EIRIRHCTERSLSYAAERCPNLEVLWIKNCPNVTDASMEKIAMNCPNLRELDISYSYGIT 164
Query: 121 HKSLALIGRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACPQDGDTEAAAIARSMPHL 180
H+SL +GR+C NLK+LKRNL+ L PS + P +YL P+ G+ EA I + M L
Sbjct: 165 HESLITLGRSCQNLKILKRNLLPRLGPSLPTIVAPLDYLATFPRYGNIEARIIGKYMTQL 224
Query: 181 EWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGCANLTSRDIANASSSLAHLKDIKKPNFY 240
+ LEIR+S L+A+GL+ +C+ C NLE++DL GC +LT DI +S L +L +I KP+F
Sbjct: 225 KHLEIRYSTLTARGLDSVCKGCSNLEYMDLRGCISLTRSDINTNTSGLKNLTEIIKPDFN 284
Query: 241 IPRSVFHTERYGH 253
P +V R G+
Sbjct: 285 PPIAVLRVPRPGN 297
>AT4G05460.1 | Symbols: | RNI-like superfamily protein |
chr4:2761106-2762400 REVERSE LENGTH=302
Length = 302
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 98/217 (45%), Gaps = 33/217 (15%)
Query: 3 VCKSWFSAFKEPSLHSVFNLDPLFDSPRELPRWWSPEFEAKIDSMLRSVVQWTHIFLTQI 62
VC+SW K+PS+ ++ L D + + ++ M R V + L I
Sbjct: 46 VCRSWRRVCKDPSMWRKIDMHNLGDLD---------DMDYNLEIMCRHAVDRSQGGLVDI 96
Query: 63 RIRHCSDRSL-ALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDVTH 121
I + L +A R NL L + C +TDD V P L EL++SYC +
Sbjct: 97 GIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITDDGFVEAVVKLP-LEELELSYC-SFSV 154
Query: 122 KSLALIGRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACPQ-DGDTEAAAIARSMPHL 180
+SL ++G+ C N+K LK LN PQ + D +A AIA +MP L
Sbjct: 155 ESLRVVGQCCLNMKTLK--------------------LNKHPQKENDDDALAIAETMPKL 194
Query: 181 EWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGCANLT 217
L++ + LS GLN I C NLE LDL C N+
Sbjct: 195 RHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVN 231
>AT4G03630.1 | Symbols: | RNI-like superfamily protein |
chr4:1608750-1610037 FORWARD LENGTH=220
Length = 220
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 20/198 (10%)
Query: 43 KIDSMLRSVVQWTHIFLTQIRIRH-CSDRSLALVAERCPNLEVLSIRSCPHVTDDSISRI 101
++ M+ V + +I I H +D L +A+R NL L + C +T +
Sbjct: 24 RLGRMMCHAVALSQGGCVEINIEHFGTDSLLTYIADRSSNLRHLGLAKCDQITGMGLFTE 83
Query: 102 AVNCPKLRELDISYCYDVTHKSLALIGRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNA 161
A+ P L +L++SYC + K+L IG C +LK LK N + P
Sbjct: 84 AMKLPLLEDLELSYCL-IKGKNLEAIGFACLHLKTLKLNCQGFKFPGFTY---------- 132
Query: 162 CPQDGDTEAAAIARSMPHLEWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGCANLT-SRD 220
D +A IA+ MP L L++ +++S GLN I CP+LE LDL C N+ D
Sbjct: 133 -----DHDALGIAKRMPELRCLQLFGNRVSDVGLNAIFDGCPHLEHLDLRQCFNINLVGD 187
Query: 221 IANASSSLAHLKDIKKPN 238
+ + +KD+++PN
Sbjct: 188 L--EKRCMERIKDLRRPN 203
>AT4G05497.1 | Symbols: | RNI-like superfamily protein |
chr4:2777903-2778801 REVERSE LENGTH=246
Length = 246
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 99/222 (44%), Gaps = 37/222 (16%)
Query: 3 VCKSWFSAFKEPSLHSVFNL---DPLFDSPRELPRWWSPEFEAKIDSMLRSVVQWTHIFL 59
VCKSW ++PS+ ++ + L +S E I+ + V + L
Sbjct: 48 VCKSWRRVCQDPSMWRKIDIRIKENLVNSV---------ELFYVIEPLCCRAVDLSQGGL 98
Query: 60 TQIRIRHCSDRS-LALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYD 118
+I I + + S L +A+R NL L + C V + A+ P L ELDI+Y
Sbjct: 99 LEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLSRGVVEAAMKLPLLEELDITYKSS 158
Query: 119 VTHKSLALIGRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACPQD---GDTEAAAIAR 175
+ + L ++G++CPNL+ LK N C D D A AIA
Sbjct: 159 IREQELKVVGQSCPNLRTLKLN---------------------CTGDVKCCDKVALAIAE 197
Query: 176 SMPHLEWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGCANLT 217
+MP L L++ + LS GLN I + CP+L+ L L C N+
Sbjct: 198 TMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCLNIN 239
>AT5G52480.1 | Symbols: | RNI-like superfamily protein |
chr5:21296918-21297762 REVERSE LENGTH=241
Length = 241
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 85/175 (48%), Gaps = 19/175 (10%)
Query: 45 DSMLRSVVQWTHIFLTQIRIR-HCSDRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAV 103
+++ R+ V + L +I I SD L +AER NL L + C +TDD + V
Sbjct: 16 EAICRNAVDRSEGGLLEINIGDFGSDSLLTYIAERSSNLRSLRLM-CSEITDDGFVQAVV 74
Query: 104 NCPKLRELDISYCYDVTHKSLALIGRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACP 163
P L EL++S ++ +S+ L G +CPNLK L N + +L
Sbjct: 75 KLPMLEELEVS-GISLSGESMKLAGLSCPNLKTLMLNRLFYLSSDDDD------------ 121
Query: 164 QDGDTEAAAIARSMPHLEWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGCANLTS 218
+A AIA SMP L L++ +KL+ GLN I CP+LE LDL C NL
Sbjct: 122 ----HDAIAIAESMPKLRHLQLCGNKLTKTGLNAILDGCPHLEHLDLRQCINLVG 172
>AT4G05475.1 | Symbols: | RNI-like superfamily protein |
chr4:2765962-2767957 REVERSE LENGTH=309
Length = 309
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 113/247 (45%), Gaps = 40/247 (16%)
Query: 3 VCKSWFSAFKEPSLHSVFNL-DPLFDSPRELPRWWSPEFEAKIDSMLRSVVQWTHIFLTQ 61
+C++W K+PS+ NL D L +E +SM R +V + L +
Sbjct: 67 LCRAWRRICKDPSMWRKINLRDCLM-------------YEFDFESMCRHIVDLSQGGLLE 113
Query: 62 IRIRH-CSDRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDVT 120
I I H SD L+ + +R NL+ L I +T+ + P L L I
Sbjct: 114 INIEHFVSDSLLSYIVDRSCNLKSLGISIYEPMTNKGVMNGIEKLPLLETLVI------F 167
Query: 121 HKSLAL----IGRNCPNLKVLKRNLMN---WLDPSQHVGIVPDEYLNACPQDGDTEAAAI 173
H S+ L IG CP LK LK N + D SQ VG +P L C D +A AI
Sbjct: 168 HSSIKLDLKAIGHACPQLKTLKLNSLGSELAHDISQ-VGYIP---LLEC----DDDALAI 219
Query: 174 ARSMPHLEWLEIRFSKLSAKGLNLICQRCPNL-EFLDLSGCANLTSRDIANASSS-LAHL 231
A SMP L L++ + L+ GLN I CP+L E LD+ C N+ + N + +
Sbjct: 220 AESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDVRKCFNINL--VGNLEKRCMKRI 277
Query: 232 KDIKKPN 238
K++++P+
Sbjct: 278 KELRRPH 284
>AT4G05470.1 | Symbols: | RNI-like superfamily protein |
chr4:2763256-2765351 REVERSE LENGTH=304
Length = 304
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 112/244 (45%), Gaps = 31/244 (12%)
Query: 3 VCKSWFSAFKEPSLHSVFNL-DPLFDSPRELPRWWSPEFEAKIDSMLRSVVQWTHIFLTQ 61
VCK W K+PS+ N D L + SM R +V + L +
Sbjct: 73 VCKEWRRICKDPSMWRKINTRDCLM-------------YNFDFVSMCRHIVDLSQGGLLE 119
Query: 62 IRIRH--CSDRSLALVAERCPNLEVLSIRSC-PHVTDDSISRIAVNCPKLRELDISY-CY 117
I + SD L+ + +R NL L + C P VT + P L L++++ C
Sbjct: 120 INVDEHFLSDSLLSYITDR--NLRSLGLGMCFPRVTKLGVVNAIAKIPLLETLEVTHSCI 177
Query: 118 DVTHKSLALIGRNCPNLKVLKRNLMNWLDPS--QHVGIVPDEYLNACPQDGDTEAAAIAR 175
+ K+ IG CP LK LK N + L P+ ++ V D+ P + D +A AIA
Sbjct: 178 KLDLKA---IGHACPQLKTLKLNSLGRLWPASDKYDSNVLDDM---GPLECDDDALAIAE 231
Query: 176 SMPHLEWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGCANLTSRDIANASSS-LAHLKDI 234
SMP L L++ ++L+ GLN I CP+LE LD+ C ++ + N L +K++
Sbjct: 232 SMPKLHHLQLMANRLTNTGLNAILDGCPHLEHLDVRKCFRISL--VGNLEKRCLEMIKEL 289
Query: 235 KKPN 238
++P
Sbjct: 290 RRPG 293
>AT4G15475.1 | Symbols: | F-box/RNI-like superfamily protein |
chr4:8845927-8848701 FORWARD LENGTH=610
Length = 610
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 32/199 (16%)
Query: 68 SDRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDVTHKSLALI 127
+ +L + + C +LE+L + C + D ++ IA C L++L I CY++ +K + I
Sbjct: 386 GNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLKKLHIRRCYEIGNKGIISI 445
Query: 128 GRNCPNLKVLKRNLMNWLDPSQHVGIVPD---EYLN--ACPQDGDTEAAAIARSMPHLEW 182
G++C +L L + + + I + LN C Q D AIAR P L
Sbjct: 446 GKHCKSLTELSLRFCDKVGNKALIAIGKGCSLQQLNVSGCNQISDAGITAIARGCPQLTH 505
Query: 183 LEIRFSK---------------------------LSAKGLNLICQRCPNLEFLDLSGCAN 215
L+I + ++ GLN + Q+C LE + C
Sbjct: 506 LDISVLQNIGDMPLAELGEGCPMLKDLVLSHCHHITDNGLNHLVQKCKLLETCHMVYCPG 565
Query: 216 LTSRDIANASSSLAHLKDI 234
+TS +A SS H+K +
Sbjct: 566 ITSAGVATVVSSCPHIKKV 584
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 19/238 (7%)
Query: 11 FKEPSLHSVFNLDPLFDSPREL----PRWWSPEFEAKIDSMLRSVVQWTHIFLTQIRIRH 66
K L V D F + EL R F+ D +R++ + + L + +
Sbjct: 271 LKNLKLQCVSVTDVAFAAVGELCTSLERLALYSFQHFTDKGMRAIGKGSK-KLKDLTLSD 329
Query: 67 C---SDRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDVTHKS 123
C S + L +A C LE + I C ++ I I +CP+L+EL + YC + + +
Sbjct: 330 CYFVSCKGLEAIAHGCKELERVEINGCHNIGTRGIEAIGKSCPRLKELALLYCQRIGNSA 389
Query: 124 LALIGRNCPNLKVLKRNLMNWLDPSQHVGI------VPDEYLNACPQDGDTEAAAIARSM 177
L IG+ C +L++L + + I + ++ C + G+ +I +
Sbjct: 390 LQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLKKLHIRRCYEIGNKGIISIGKHC 449
Query: 178 PHLEWLEIRF-SKLSAKGLNLICQRCPNLEFLDLSGCANLTSRD---IANASSSLAHL 231
L L +RF K+ K L I + C +L+ L++SGC ++ IA L HL
Sbjct: 450 KSLTELSLRFCDKVGNKALIAIGKGC-SLQQLNVSGCNQISDAGITAIARGCPQLTHL 506
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 24/183 (13%)
Query: 45 DSMLRSVVQWTHIFLT-QIRIRHCSDRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAV 103
D L +V Q H +++ +D + A V E C +LE L++ S H TD + I
Sbjct: 258 DKGLIAVAQGCHRLKNLKLQCVSVTDVAFAAVGELCTSLERLALYSFQHFTDKGMRAIGK 317
Query: 104 NCPKLRELDISYCYDVTHKSLALIGRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACP 163
KL++L +S CY V+ K L I C L+ ++ +N C
Sbjct: 318 GSKKLKDLTLSDCYFVSCKGLEAIAHGCKELERVE--------------------INGCH 357
Query: 164 QDGDTEAAAIARSMPHLEWLEIRF-SKLSAKGLNLICQRCPNLEFLDLSGCANLTSRDIA 222
G AI +S P L+ L + + ++ L I + C +LE L L C+ + DIA
Sbjct: 358 NIGTRGIEAIGKSCPRLKELALLYCQRIGNSALQEIGKGCKSLEILHLVDCSGIG--DIA 415
Query: 223 NAS 225
S
Sbjct: 416 MCS 418
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 41 EAKIDSMLRSVVQWTHIFLTQIRIRHCSDRSLALVAERCPNLEVLSIRSCPHVTDDSISR 100
+A I ++ R Q TH+ ++ ++ + D LA + E CP L+ L + C H+TD+ ++
Sbjct: 490 DAGITAIARGCPQLTHLDISVLQ--NIGDMPLAELGEGCPMLKDLVLSHCHHITDNGLNH 547
Query: 101 IAVNCPKLRELDISYCYDVTHKSLALIGRNCPNLK 135
+ C L + YC +T +A + +CP++K
Sbjct: 548 LVQKCKLLETCHMVYCPGITSAGVATVVSSCPHIK 582
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 17/187 (9%)
Query: 49 RSVVQWTHIFLTQIRIRHCSDRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKL 108
+ + TH + +D L +A P +E LS+ CP+V+ + +A C L
Sbjct: 109 KKLTDKTHSGAENVESSSLTDTGLTALANGFPRIENLSLIWCPNVSSVGLCSLAQKCTSL 168
Query: 109 RELDISYCYDVTHKSLALIGRNCPNLKVLKRNLMNWLDPSQHVGIV----------PDEY 158
+ LD+ CY V + LA +G+ C L+ L + + + VG++
Sbjct: 169 KSLDLQGCY-VGDQGLAAVGKFCKQLEELN---LRFCEGLTDVGVIDLVVGCSKSLKSIG 224
Query: 159 LNACPQDGDTEAAAIARSMPHLEWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGCANLTS 218
+ A + D A+ LE L + + KGL + Q C L+ L L C ++T
Sbjct: 225 VAASAKITDLSLEAVGSHCKLLEVLYLDSEYIHDKGLIAVAQGCHRLKNLKLQ-CVSVT- 282
Query: 219 RDIANAS 225
D+A A+
Sbjct: 283 -DVAFAA 288
>AT4G08980.5 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 31/215 (14%)
Query: 3 VCKSWFSAFKEPSLHSVFNLDPLFDSPRELPRWWSPEFEAK--IDSMLRSVVQWTHIFLT 60
VCK+W A P +++ WS F +D ML ++ + L
Sbjct: 37 VCKAWNRAVTGPYCWQEIDIE-----------LWSNRFHQSDHLDRMLEMLIPRSAGSLR 85
Query: 61 QIRIRHCSDRSL-ALVAERCPNLEVLSI-RSCPHVTDDSISRIAVNCPKLRELDISYCYD 118
++ + + S+ + +A+ +L+ L + RS +T+ + +A L LD+SYC
Sbjct: 86 KLSVTGLRNDSIFSFIAQHAGSLKTLKVPRS--GLTNSGVVNVAEKLSSLTFLDLSYCCK 143
Query: 119 VTHKSLALIGRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACPQDGDTEAAAIARSMP 178
+ +++ IG++C +L+ RN M+ LD + V D EA AIA +MP
Sbjct: 144 IGPEAIQAIGKHCKSLREFCRN-MHPLDVASVVS-------------HDDEAYAIANTMP 189
Query: 179 HLEWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGC 213
L+ LEI + ++S +G+ I C LEFL+L GC
Sbjct: 190 KLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGC 224
>AT4G08980.4 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 31/215 (14%)
Query: 3 VCKSWFSAFKEPSLHSVFNLDPLFDSPRELPRWWSPEFEAK--IDSMLRSVVQWTHIFLT 60
VCK+W A P +++ WS F +D ML ++ + L
Sbjct: 37 VCKAWNRAVTGPYCWQEIDIE-----------LWSNRFHQSDHLDRMLEMLIPRSAGSLR 85
Query: 61 QIRIRHCSDRSL-ALVAERCPNLEVLSI-RSCPHVTDDSISRIAVNCPKLRELDISYCYD 118
++ + + S+ + +A+ +L+ L + RS +T+ + +A L LD+SYC
Sbjct: 86 KLSVTGLRNDSIFSFIAQHAGSLKTLKVPRS--GLTNSGVVNVAEKLSSLTFLDLSYCCK 143
Query: 119 VTHKSLALIGRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACPQDGDTEAAAIARSMP 178
+ +++ IG++C +L+ RN M+ LD + V D EA AIA +MP
Sbjct: 144 IGPEAIQAIGKHCKSLREFCRN-MHPLDVASVVS-------------HDDEAYAIANTMP 189
Query: 179 HLEWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGC 213
L+ LEI + ++S +G+ I C LEFL+L GC
Sbjct: 190 KLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGC 224
>AT4G08980.2 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 31/215 (14%)
Query: 3 VCKSWFSAFKEPSLHSVFNLDPLFDSPRELPRWWSPEFEAK--IDSMLRSVVQWTHIFLT 60
VCK+W A P +++ WS F +D ML ++ + L
Sbjct: 37 VCKAWNRAVTGPYCWQEIDIE-----------LWSNRFHQSDHLDRMLEMLIPRSAGSLR 85
Query: 61 QIRIRHCSDRSL-ALVAERCPNLEVLSI-RSCPHVTDDSISRIAVNCPKLRELDISYCYD 118
++ + + S+ + +A+ +L+ L + RS +T+ + +A L LD+SYC
Sbjct: 86 KLSVTGLRNDSIFSFIAQHAGSLKTLKVPRS--GLTNSGVVNVAEKLSSLTFLDLSYCCK 143
Query: 119 VTHKSLALIGRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACPQDGDTEAAAIARSMP 178
+ +++ IG++C +L+ RN M+ LD + V D EA AIA +MP
Sbjct: 144 IGPEAIQAIGKHCKSLREFCRN-MHPLDVASVVS-------------HDDEAYAIANTMP 189
Query: 179 HLEWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGC 213
L+ LEI + ++S +G+ I C LEFL+L GC
Sbjct: 190 KLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGC 224
>AT4G08980.3 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 31/215 (14%)
Query: 3 VCKSWFSAFKEPSLHSVFNLDPLFDSPRELPRWWSPEFEAK--IDSMLRSVVQWTHIFLT 60
VCK+W A P +++ WS F +D ML ++ + L
Sbjct: 37 VCKAWNRAVTGPYCWQEIDIE-----------LWSNRFHQSDHLDRMLEMLIPRSAGSLR 85
Query: 61 QIRIRHCSDRSL-ALVAERCPNLEVLSI-RSCPHVTDDSISRIAVNCPKLRELDISYCYD 118
++ + + S+ + +A+ +L+ L + RS +T+ + +A L LD+SYC
Sbjct: 86 KLSVTGLRNDSIFSFIAQHAGSLKTLKVPRS--GLTNSGVVNVAEKLSSLTFLDLSYCCK 143
Query: 119 VTHKSLALIGRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACPQDGDTEAAAIARSMP 178
+ +++ IG++C +L+ RN M+ LD + V D EA AIA +MP
Sbjct: 144 IGPEAIQAIGKHCKSLREFCRN-MHPLDVASVVS-------------HDDEAYAIANTMP 189
Query: 179 HLEWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGC 213
L+ LEI + ++S +G+ I C LEFL+L GC
Sbjct: 190 KLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGC 224
>AT4G08980.1 | Symbols: FBW2 | F-BOX WITH WD-40 2 |
chr4:5758993-5760108 FORWARD LENGTH=317
Length = 317
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 31/215 (14%)
Query: 3 VCKSWFSAFKEPSLHSVFNLDPLFDSPRELPRWWSPEFEAK--IDSMLRSVVQWTHIFLT 60
VCK+W A P +++ WS F +D ML ++ + L
Sbjct: 37 VCKAWNRAVTGPYCWQEIDIE-----------LWSNRFHQSDHLDRMLEMLIPRSAGSLR 85
Query: 61 QIRIRHCSDRSL-ALVAERCPNLEVLSI-RSCPHVTDDSISRIAVNCPKLRELDISYCYD 118
++ + + S+ + +A+ +L+ L + RS +T+ + +A L LD+SYC
Sbjct: 86 KLSVTGLRNDSIFSFIAQHAGSLKTLKVPRS--GLTNSGVVNVAEKLSSLTFLDLSYCCK 143
Query: 119 VTHKSLALIGRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACPQDGDTEAAAIARSMP 178
+ +++ IG++C +L+ RN M+ LD + V D EA AIA +MP
Sbjct: 144 IGPEAIQAIGKHCKSLREFCRN-MHPLDVASVVS-------------HDDEAYAIANTMP 189
Query: 179 HLEWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGC 213
L+ LEI + ++S +G+ I C LEFL+L GC
Sbjct: 190 KLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGC 224
>AT5G52480.2 | Symbols: | RNI-like superfamily protein |
chr5:21296918-21297529 REVERSE LENGTH=203
Length = 203
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 68/141 (48%), Gaps = 18/141 (12%)
Query: 78 RCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDVTHKSLALIGRNCPNLKVL 137
R NL L + C +TDD + V P L EL++S ++ +S+ L G +CPNLK L
Sbjct: 12 RSSNLRSLRLM-CSEITDDGFVQAVVKLPMLEELEVS-GISLSGESMKLAGLSCPNLKTL 69
Query: 138 KRNLMNWLDPSQHVGIVPDEYLNACPQDGDTEAAAIARSMPHLEWLEIRFSKLSAKGLNL 197
N + +L +A AIA SMP L L++ +KL+ GLN
Sbjct: 70 MLNRLFYLSSDDDD----------------HDAIAIAESMPKLRHLQLCGNKLTKTGLNA 113
Query: 198 ICQRCPNLEFLDLSGCANLTS 218
I CP+LE LDL C NL
Sbjct: 114 ILDGCPHLEHLDLRQCINLVG 134
>AT5G25350.1 | Symbols: EBF2 | EIN3-binding F box protein 2 |
chr5:8794842-8796882 REVERSE LENGTH=623
Length = 623
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 107/254 (42%), Gaps = 39/254 (15%)
Query: 31 ELPRWWSPEFEAKIDSMLR----SVVQWTHIFLTQIRIRH------CSDRSLALVAERCP 80
E + S E K + LR +V + L +++IR +D L VA CP
Sbjct: 108 EGEGFLSRSLEGKKATDLRLAAIAVGTSSRGGLGKLQIRGSGFESKVTDVGLGAVAHGCP 167
Query: 81 NLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDVTHKSLALIGRNCPNLKVLKRN 140
+L ++S+ + P V+D +S IA +CP + +LD+S C +T L I NC NL
Sbjct: 168 SLRIVSLWNLPAVSDLGLSEIARSCPMIEKLDLSRCPGITDSGLVAIAENCVNL------ 221
Query: 141 LMNWLDPSQHVGIVPDEYLNACPQDGDTEAAAIARSMPHLEWLEIRFS-KLSAKGLNLIC 199
D +++C G+ AIAR +L + IR ++ +G+ +
Sbjct: 222 --------------SDLTIDSCSGVGNEGLRAIARRCVNLRSISIRSCPRIGDQGVAFLL 267
Query: 200 QRCPN------LEFLDLSGCANLTSRDIANASSSLA--HLKDIKKPNFYIPRSVFHTERY 251
+ + L+ L++SG + A + L L+ + + F++ + ++
Sbjct: 268 AQAGSYLTKVKLQMLNVSGLSLAVIGHYGAAVTDLVLHGLQGVNEKGFWVMGNAKGLKKL 327
Query: 252 GHWQLYDERFQTDV 265
+ R TDV
Sbjct: 328 KSLSVMSCRGMTDV 341
>AT5G23340.1 | Symbols: | RNI-like superfamily protein |
chr5:7856314-7857983 FORWARD LENGTH=405
Length = 405
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 31/172 (18%)
Query: 58 FLTQIRIRHCSDRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCY 117
FL R SD+ L+ VAE C +L L + C +TD+S+ ++ C L L + C
Sbjct: 128 FLDVSYCRKLSDKGLSAVAEGCHDLRALHLAGCRFITDESLKSLSERCRDLEALGLQGCT 187
Query: 118 DVTHKSLALIGRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACPQDGDTEAAAIAR-- 175
++T LA + + C +K L +N C GD +++A+
Sbjct: 188 NITDSGLADLVKGCRKIKSLD--------------------INKCSNVGDAGVSSVAKAC 227
Query: 176 --SMPHLEWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGCANLTSRDIANAS 225
S+ L+ L+ K+ + ++ + Q C NLE L + GC RDI++ S
Sbjct: 228 ASSLKTLKLLDCY--KVGNESISSLAQFCKNLETLIIGGC-----RDISDES 272
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 81/171 (47%), Gaps = 24/171 (14%)
Query: 45 DSMLRSVVQWTHIFLTQIRIRHC---SDRSLALVAERCPNLEVLSIRSCPHVTDDSISRI 101
D+ + SV + L +++ C + S++ +A+ C NLE L I C ++D+SI +
Sbjct: 217 DAGVSSVAKACASSLKTLKLLDCYKVGNESISSLAQFCKNLETLIIGGCRDISDESIMLL 276
Query: 102 AVNCP-KLRELDISYCYDVTHKSLALIGRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLN 160
A +C L+ L + +C +++ SL+ I + C NL+ L + + + D+ L
Sbjct: 277 ADSCKDSLKNLRMDWCLNISDSSLSCILKQCKNLEALDIGCCEEVTDTAFRDLGSDDVLG 336
Query: 161 ACPQDGDTEAAAIARSMPHLEWLEI-RFSKLSAKGLNLICQRCPNLEFLDL 210
L+ L++ +K++ G+ + +C +LE++D+
Sbjct: 337 -------------------LKVLKVSNCTKITVTGIGKLLDKCSSLEYIDV 368
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 82/175 (46%), Gaps = 22/175 (12%)
Query: 68 SDRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDVTHKSLALI 127
+D LA+++E L VL++ +C +TD ++ I L+ LD+SYC ++ K L+ +
Sbjct: 86 TDSDLAVISEGFKFLRVLNLHNCKGITDTGLASIGRCLSLLQFLDVSYCRKLSDKGLSAV 145
Query: 128 GRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACPQDGDTEAAAIARSMPHLEWLEIRF 187
C +L+ L +L C D +++ LE L ++
Sbjct: 146 AEGCHDLRAL--------------------HLAGCRFITDESLKSLSERCRDLEALGLQG 185
Query: 188 -SKLSAKGLNLICQRCPNLEFLDLSGCANLTSRDIANASSSLA-HLKDIKKPNFY 240
+ ++ GL + + C ++ LD++ C+N+ +++ + + A LK +K + Y
Sbjct: 186 CTNITDSGLADLVKGCRKIKSLDINKCSNVGDAGVSSVAKACASSLKTLKLLDCY 240
>AT1G80630.1 | Symbols: | RNI-like superfamily protein |
chr1:30308879-30310615 REVERSE LENGTH=578
Length = 578
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 70/177 (39%), Gaps = 48/177 (27%)
Query: 58 FLTQIRIRHCSDRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCY 117
FL R + D L ++ CP +E L + CP +T D I + NC KLR LDIS C
Sbjct: 375 FLYLSRNHNLLDECLEKISRHCPFIESLDVAQCPGITRDGILEVWRNCGKLRSLDISRCT 434
Query: 118 DVTHKSLALIGRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACPQDGDTEAAAIARSM 177
+ KSL ++ P L E L AC D EA
Sbjct: 435 GI--KSLGVVDFELPKL----------------------ESLRACGTWIDDEA------- 463
Query: 178 PHLEWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGCANLTSRDIANASSSLAHLKDI 234
L++I ++C L LDL GC N++SR + S L++I
Sbjct: 464 -----------------LDMISKKCRGLLHLDLQGCLNVSSRGVKEVVQSCIRLREI 503
>AT4G05490.1 | Symbols: | RNI-like superfamily protein |
chr4:2771044-2772252 REVERSE LENGTH=307
Length = 307
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 107/240 (44%), Gaps = 35/240 (14%)
Query: 3 VCKSWFSAFKEPSLHSVFNLDPLFDSPRELPRWWSPEFEAKIDSMLRSVVQWTHIFLTQI 62
VC+SW K+P + ++ R L R + +++ R VV + L +
Sbjct: 54 VCRSWRRVSKDPLIWRRIDM-------RNLRRLYCI---YAMEACCRHVVDLSQGGLLEF 103
Query: 63 RI---RHCSDRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDV 119
I R + L +AER NL L ++ +T I V P L EL++ YC +
Sbjct: 104 NIDQWRFQTTSLLNYMAERSSNLRRLRVKG-GQITSVGIFEAIVKLPLLEELELLYC-SI 161
Query: 120 THKSLALIGRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACPQDGDTEAAAIARSMPH 179
+ IG+ CPNLK LK VG +LN + D +A AIA +MP
Sbjct: 162 EEEHFKTIGQACPNLKTLKL-----------VGFW--SHLN----ESDNDALAIADTMPG 204
Query: 180 LEWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGCANLT-SRDIANASSSLAHLKDIKKPN 238
L L++ + L+ GLN I CP+LE LDL C N+ D+ L +KD + PN
Sbjct: 205 LLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFNINLFGDLER--QCLERIKDFRCPN 262
>AT2G25490.1 | Symbols: EBF1, FBL6 | EIN3-binding F box protein 1 |
chr2:10848018-10850275 REVERSE LENGTH=628
Length = 628
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 20/119 (16%)
Query: 68 SDRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDVTHKSLALI 127
SD L + CP+L LS+ + +TD+ + IA C +L +L+++ C +T K L I
Sbjct: 165 SDLGLRSIGRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKGLVAI 224
Query: 128 GRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACPQDGDTEAAAIARSMPHLEWLEIR 186
++CPNL L L AC + GD AIARS L+ + I+
Sbjct: 225 AKSCPNLTEL--------------------TLEACSRIGDEGLLAIARSCSKLKSVSIK 263
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 23/179 (12%)
Query: 59 LTQIRIRHCSDRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYD 118
LT + +D L V + CPN++ I P ++D+ + A L L + C+
Sbjct: 340 LTITACQGVTDMGLESVGKGCPNMKKAIISKSPLLSDNGLVSFAKASLSLESLQLEECHR 399
Query: 119 VTH--------------KSLALIGRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACPQ 164
VT K+ +L+ NC ++ R+L L S H + + CP
Sbjct: 400 VTQFGFFGSLLNCGEKLKAFSLV--NCLSI----RDLTTGLPASSHCSALRSLSIRNCPG 453
Query: 165 DGDTEAAAIARSMPHLEWLEI-RFSKLSAKGLNLICQRCPNLEFLDLSGCANLTSRDIA 222
GD AAI + P LE +++ ++ G + Q +L ++ SGC+NLT R I+
Sbjct: 454 FGDANLAAIGKLCPQLEDIDLCGLKGITESGFLHLIQ--SSLVKINFSGCSNLTDRVIS 510
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 59 LTQIRIRHCS---DRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISY 115
L ++ + CS D+ L +A+ CPNL L++ +C + D+ + IA +C KL+ + I
Sbjct: 205 LEKLELNRCSTITDKGLVAIAKSCPNLTELTLEACSRIGDEGLLAIARSCSKLKSVSIKN 264
Query: 116 CYDVTHKSLA-LIGRNCPNLKVLKRNLMNWLDPSQHV 151
C V + +A L+ +L LK ++N D S V
Sbjct: 265 CPLVRDQGIASLLSNTTCSLAKLKLQMLNVTDVSLAV 301
>AT5G27920.1 | Symbols: | F-box family protein |
chr5:9942063-9944507 REVERSE LENGTH=642
Length = 642
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 23/150 (15%)
Query: 68 SDRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDVTHKSLALI 127
+DR L ++ +C NL+ L + C +++D I I C KL ELD+ C LA +
Sbjct: 417 NDRGLEYIS-KCSNLQRLKLGLCTNISDKGIFHIGSKCSKLLELDLYRCAGFGDDGLAAL 475
Query: 128 GRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACPQDGDTEAAAIARSMPHLEWLEIRF 187
R C +L L L+ C + DT I R + L LE+R
Sbjct: 476 SRGCKSLNRL--------------------ILSYCCELTDTGVEQI-RQLELLSHLELRG 514
Query: 188 SK-LSAKGLNLICQRCPNLEFLDLSGCANL 216
K ++ GL I C L +LD+ C N+
Sbjct: 515 LKNITGVGLAAIASGCKKLGYLDVKLCENI 544
>AT1G21410.1 | Symbols: SKP2A | F-box/RNI-like superfamily protein |
chr1:7497479-7499386 FORWARD LENGTH=360
Length = 360
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 98/253 (38%), Gaps = 35/253 (13%)
Query: 3 VCKSWFSAFKEPSLHSVFNLDPLFDSPRELPRWWSPEFEAKIDSMLRSVVQWTHIFLTQI 62
VC W A F R W + + + S++ V+ + L Q
Sbjct: 54 VCTGWRDAIS-------------FGLTRLRLSWCNNNMNSLVLSLVPKFVKLQTLNLRQD 100
Query: 63 RIRHCSDRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDVTHK 122
+ D ++ +A C L+ L + +TD S+ +A CP L +L++S C +
Sbjct: 101 K-PQLEDNAVEAIANHCHELQELDLSKSLKITDRSLYALAHGCPDLTKLNLSGCTSFSDT 159
Query: 123 SLALIGRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACPQDGDTEAAAIARSMPHLEW 182
++A + R C LKVL NL V V D L A + + + +L W
Sbjct: 160 AIAYLTRFCRKLKVL--NLCGC------VKAVTDNALEAIGNNCNQMQSL------NLGW 205
Query: 183 LEIRFSKLSAKGLNLICQRCPNLEFLDLSGCANLTSRDIANASSSLAHLKDIKKPNFYIP 242
E +S G+ + CP+L LDL GC +T + + HL+ + Y
Sbjct: 206 CE----NISDDGVMSLAYGCPDLRTLDLCGCVLITDESVVALADWCVHLRSL---GLYYC 258
Query: 243 RSVFHTERYGHWQ 255
R++ Y Q
Sbjct: 259 RNITDRAMYSLAQ 271
>AT4G33210.1 | Symbols: SLOMO | F-box family protein |
chr4:16015971-16020697 REVERSE LENGTH=990
Length = 990
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 62/110 (56%), Gaps = 6/110 (5%)
Query: 79 CPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDVTHKSLALIGRNCPNLKVLK 138
CP L++L I SC + D +I A++CP+L LD+S C V+ ++L I + C NL +L
Sbjct: 368 CPLLQLLDIASCHKLLDAAIRSAAISCPQLESLDVSNCSCVSDETLREIAQACANLHILN 427
Query: 139 RNLM-NWLDPSQHVGIVPDEYLNACPQDGDTEAAA--IARSMPHLEWLEI 185
+ N S H+ ++ L++C +G T A+ IA S P LE LE+
Sbjct: 428 ASYCPNISLESVHLPMLTVLKLHSC--EGITSASMTWIANS-PALEVLEL 474
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 78/179 (43%), Gaps = 28/179 (15%)
Query: 58 FLTQIRIRHCS---DRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDIS 114
LT + CS D L+ CP +E L + SCP + D +S + P L LD+S
Sbjct: 685 LLTSLDASFCSQLRDDCLSATTASCPLIESLVLMSCPSIGSDGLSSLN-GLPNLTVLDLS 743
Query: 115 YCYDVTHKSLALIGRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACPQDGDTEAAAIA 174
Y + + +L + ++C LKVLK +L D L ++G
Sbjct: 744 YTFLM---NLEPVFKSCIQLKVLKLQACKYL---------TDSSLEPLYKEG-------- 783
Query: 175 RSMPHLEWLEIRFSKLSAKGLNLICQRCPNLEFLDLSGCANLTSRDIANASSSLAHLKD 233
++P LE L++ + L ++ + C +L L L+GC N+ D + S HL D
Sbjct: 784 -ALPALEELDLSYGTLCQTAIDDLLACCTHLTHLSLNGCVNMHDLDWGSTS---VHLFD 838
>AT3G58530.1 | Symbols: | RNI-like superfamily protein |
chr3:21645759-21648219 FORWARD LENGTH=353
Length = 353
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 25/156 (16%)
Query: 69 DRSLALVAERCPN----LEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDVTHKSL 124
D L LV CP+ LE L++ C ++D+ I I CPKL+ I + VT +
Sbjct: 96 DSHLKLVKTECPDALLSLEWLNLNVCQKISDNGIEAITSICPKLKVFSIYWNVRVTDAGI 155
Query: 125 ALIGRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACPQDGDTEAAAIARSMPHLEWLE 184
+ +NC + + D L+ C D +A S P LE L
Sbjct: 156 RNLVKNCRH--------------------ITDLNLSGCKSLTDKSMQLVAESYPDLESLN 195
Query: 185 I-RFSKLSAKGLNLICQRCPNLEFLDLSGCANLTSR 219
I R K++ GL + Q+C +L+ L+L + T +
Sbjct: 196 ITRCVKITDDGLLQVLQKCFSLQTLNLYALSGFTDK 231
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 26/181 (14%)
Query: 68 SDRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDVTHKSLALI 127
SD + + CP L+V SI VTD I + NC + +L++S C +T KS+ L+
Sbjct: 125 SDNGIEAITSICPKLKVFSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTDKSMQLV 184
Query: 128 GRNCPNLKVLKRNLMNWLDPSQHVGIVPD------------EYLNACPQDGDTEAAAIAR 175
+ P+L+ L+ ++ V I D + LN G T+ A +
Sbjct: 185 AESYPDLES--------LNITRCVKITDDGLLQVLQKCFSLQTLNLYALSGFTDKAYMKI 236
Query: 176 S-MPHLEWLEIRFSK-LSAKGLNLICQRCPNLEFLDLSGCANLTS---RDIANASSSLAH 230
S + L +L+I ++ +S +G+ I +C LE L+L+ C +T IAN+ +SL
Sbjct: 237 SLLADLRFLDICGAQNISDEGIGHI-AKCNKLESLNLTWCVRITDAGVNTIANSCTSLEF 295
Query: 231 L 231
L
Sbjct: 296 L 296
>AT1G77000.2 | Symbols: SKP2B | RNI-like superfamily protein |
chr1:28940888-28942401 FORWARD LENGTH=360
Length = 360
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 21/187 (11%)
Query: 69 DRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDVTHKSLALIG 128
D ++ +A C L+ L + +TD S+ +A C L +L++S C + +LA +
Sbjct: 106 DNAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLT 165
Query: 129 RNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACPQDGDTEAAAIARSMPHLEWLEIRFS 188
R C LK+L NL ++ V D L A ++ + + +L W E
Sbjct: 166 RFCRKLKIL--NLCGCVEA------VSDNTLQAIGENCNQLQSL------NLGWCE---- 207
Query: 189 KLSAKGLNLICQRCPNLEFLDLSGCANLTSRDIANASSSLAHLKDIKKPNFYIPRSVFHT 248
+S G+ + CP+L LDL C +T + ++ HL+ + Y R++
Sbjct: 208 NISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALANRCIHLRSL---GLYYCRNITDR 264
Query: 249 ERYGHWQ 255
Y Q
Sbjct: 265 AMYSLAQ 271
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 68 SDRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDVTHKSLALI 127
SD +L + E C L+ L++ C +++DD + +A CP LR LD+ C +T +S+ +
Sbjct: 184 SDNTLQAIGENCNQLQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVAL 243
Query: 128 GRNCPNLKVL 137
C +L+ L
Sbjct: 244 ANRCIHLRSL 253
>AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily
protein | chr1:28940888-28942401 FORWARD LENGTH=360
Length = 360
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 21/187 (11%)
Query: 69 DRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDVTHKSLALIG 128
D ++ +A C L+ L + +TD S+ +A C L +L++S C + +LA +
Sbjct: 106 DNAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLT 165
Query: 129 RNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACPQDGDTEAAAIARSMPHLEWLEIRFS 188
R C LK+L NL ++ V D L A ++ + + +L W E
Sbjct: 166 RFCRKLKIL--NLCGCVEA------VSDNTLQAIGENCNQLQSL------NLGWCE---- 207
Query: 189 KLSAKGLNLICQRCPNLEFLDLSGCANLTSRDIANASSSLAHLKDIKKPNFYIPRSVFHT 248
+S G+ + CP+L LDL C +T + ++ HL+ + Y R++
Sbjct: 208 NISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALANRCIHLRSL---GLYYCRNITDR 264
Query: 249 ERYGHWQ 255
Y Q
Sbjct: 265 AMYSLAQ 271
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 68 SDRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDVTHKSLALI 127
SD +L + E C L+ L++ C +++DD + +A CP LR LD+ C +T +S+ +
Sbjct: 184 SDNTLQAIGENCNQLQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVAL 243
Query: 128 GRNCPNLKVL 137
C +L+ L
Sbjct: 244 ANRCIHLRSL 253
>AT5G01720.1 | Symbols: | RNI-like superfamily protein |
chr5:267118-270391 REVERSE LENGTH=665
Length = 665
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 15/138 (10%)
Query: 68 SDRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDVTHKSLALI 127
+D+ L+ + C NL L + +TD IS IA C L ++ISYC D+T KSL +
Sbjct: 445 TDKGLSYIGMGCSNLRELDLYRSVGITDVGISTIAQGCIHLETINISYCQDITDKSLVSL 504
Query: 128 ----------GRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACPQDGDTEAAAIARSM 177
R CPN + + L + + V L CP D A+A
Sbjct: 505 SKCSLLQTFESRGCPN--ITSQGLAAIAVRCKRLAKVD---LKKCPSINDAGLLALAHFS 559
Query: 178 PHLEWLEIRFSKLSAKGL 195
+L+ + + + ++ GL
Sbjct: 560 QNLKQINVSDTAVTEVGL 577
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 46/183 (25%)
Query: 65 RHCSDRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDIS---------- 114
R S S+ +A CP L L + SC V+ ++ I C L ELD++
Sbjct: 366 RKLSRVSITQIANSCPLLVSLKMESCSLVSREAFWLIGQKCRLLEELDLTDNEIDDEGLK 425
Query: 115 --------------YCYDVTHKSLALIGRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLN 160
C ++T K L+ IG C NL+ LD + VGI
Sbjct: 426 SISSCLSLSSLKLGICLNITDKGLSYIGMGCSNLR--------ELDLYRSVGIT------ 471
Query: 161 ACPQDGDTEAAAIARSMPHLEWLEIRFSK-LSAKGLNLICQRCPNLEFLDLSGCANLTSR 219
D + IA+ HLE + I + + ++ K L + +C L+ + GC N+TS+
Sbjct: 472 ------DVGISTIAQGCIHLETINISYCQDITDKSLVSL-SKCSLLQTFESRGCPNITSQ 524
Query: 220 DIA 222
+A
Sbjct: 525 GLA 527
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 88/216 (40%), Gaps = 39/216 (18%)
Query: 63 RIRHCSDRSLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISY------- 115
R + +D + +A C L +S++ C V D + +AV C +R LD+SY
Sbjct: 159 RCKMLTDMGIGCIAVGCKKLNTVSLKWCVGVGDLGVGLLAVKCKDIRTLDLSYLPITGKC 218
Query: 116 -----------------CYDVTHKSLALIGRNCPNLKVLK---------RNLMNWLDPSQ 149
C+ V SL + +C +LK L R L + L +
Sbjct: 219 LHDILKLQHLEELLLEGCFGVDDDSLKSLRHDCKSLKKLDASSCQNLTHRGLTSLLSGA- 277
Query: 150 HVGIVPDEYLNACPQDGDTEAAAIARSMPHLEWLEIRFSKLSAKGLNLICQRCPNLEFLD 209
G + L+ C + A+ + + L+ + + ++ GL I C +L+ +
Sbjct: 278 --GYLQRLDLSHCSSVISLDFASSLKKVSALQSIRLDGCSVTPDGLKAIGTLCNSLKEVS 335
Query: 210 LSGCANLTSRDIANASSSLAHLKDIKKPNFYIPRSV 245
LS C ++T + SS + LKD++K + R +
Sbjct: 336 LSKCVSVTDEGL---SSLVMKLKDLRKLDITCCRKL 368
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 13/186 (6%)
Query: 59 LTQIRIRHCSDR--SLALVAERCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYC 116
L IR+ CS L + C +L+ +S+ C VTD+ +S + + LR+LDI+ C
Sbjct: 306 LQSIRLDGCSVTPDGLKAIGTLCNSLKEVSLSKCVSVTDEGLSSLVMKLKDLRKLDITCC 365
Query: 117 YDVTHKSLALIGRNCPNLKVLKRNLMN-------WLDPSQHVGIVPDEYLNACPQDGDTE 169
++ S+ I +CP L LK + WL Q ++ E L+ + D E
Sbjct: 366 RKLSRVSITQIANSCPLLVSLKMESCSLVSREAFWL-IGQKCRLL--EELDLTDNEIDDE 422
Query: 170 AAAIARSMPHLEWLEIRFS-KLSAKGLNLICQRCPNLEFLDLSGCANLTSRDIANASSSL 228
S L L++ ++ KGL+ I C NL LDL +T I+ +
Sbjct: 423 GLKSISSCLSLSSLKLGICLNITDKGLSYIGMGCSNLRELDLYRSVGITDVGISTIAQGC 482
Query: 229 AHLKDI 234
HL+ I
Sbjct: 483 IHLETI 488
>AT5G67250.1 | Symbols: SKIP2, VFB4 | SKP1/ASK1-interacting protein
2 | chr5:26831677-26833260 REVERSE LENGTH=527
Length = 527
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 65/159 (40%), Gaps = 31/159 (19%)
Query: 50 SVVQWTHIFLTQIRIRHCSDRSLALVAERCPNLEVLSIRS--CPHVTDDSISRIAVNCPK 107
S V+ HI ++ CS+ L VAERC L L I + D+ + +A +C
Sbjct: 287 SNVETLHI----VKTPECSNFGLIYVAERCKLLRKLHIDGWRTNRIGDEGLLSVAKHCLN 342
Query: 108 LRELDISYCYDVTHKSLALIGRNCPNLKVLKRNLMNWLDPSQHVGIVPDEYLNACPQD-- 165
L+EL + + TH SLA I NC L E L C
Sbjct: 343 LQEL-VLIGVNATHMSLAAIASNCEKL----------------------ERLALCGSGTI 379
Query: 166 GDTEAAAIARSMPHLEWLEIRFSKLSAKGLNLICQRCPN 204
GDTE A IAR L I+ +S +G+ + CPN
Sbjct: 380 GDTEIACIARKCGALRKFCIKGCPVSDRGIEALAVGCPN 418
>AT3G60350.1 | Symbols: ARABIDILLO-2, ARABIDILLO2 | ARABIDILLO-2 |
chr3:22306806-22310596 REVERSE LENGTH=928
Length = 928
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 65 RHCSDRSLALVAERCPNLEVLSIRS--CPHVTDDSISRIAVNCPKLRELDISYCYDVTHK 122
R +D +L+++A R LE L + C +T D+I IA CPKL++L +S DV+ +
Sbjct: 136 RKITDATLSMIAARHEALESLQLGPDFCERITSDAIRVIAFCCPKLKKLRVSGMRDVSSE 195
Query: 123 SLALIGRNCPNLKVL 137
++ + ++CP L L
Sbjct: 196 AIESLAKHCPQLSDL 210
>AT5G21900.1 | Symbols: | RNI-like superfamily protein |
chr5:7238239-7240338 FORWARD LENGTH=544
Length = 544
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 7/170 (4%)
Query: 78 RCPNLEVLSIRSCPHVTDDSISRIAVNCPKLRELDISYCYDVTHKSLALIGRNCPNLKVL 137
R L LS+ +C VTD+ + I C KL LDI+ +T KSL I C LK L
Sbjct: 360 RSSILTDLSLANCNEVTDECMWHIGRYCKKLEALDITDLDKLTDKSLEFITEGCRYLKSL 419
Query: 138 KRNLMNWLDP------SQHVGIVPDEYLNACPQDGDTEAAAIARSMPHLEWLEIRF-SKL 190
K + D G + + LN G A ++A+ L++L++ + +L
Sbjct: 420 KLTSNRFSDECIAAFLEVSGGSLRELCLNKVRDVGPETAFSLAKVCKMLQFLDLSWCRRL 479
Query: 191 SAKGLNLICQRCPNLEFLDLSGCANLTSRDIANASSSLAHLKDIKKPNFY 240
L I + C +L+ L L G + + S S H+ +K + Y
Sbjct: 480 KEDDLRRILRCCSSLQSLKLFGWTQVEDTYLEELSRSDVHITGLKLTSLY 529
>AT2G44900.1 | Symbols: ARABIDILLO-1, ARABIDILLO1 | ARABIDILLO-1 |
chr2:18511719-18515762 REVERSE LENGTH=930
Length = 930
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 65 RHCSDRSLALVAERCPNLEVLSIRS--CPHVTDDSISRIAVNCPKLRELDISYCYDVTHK 122
+ +D +L+++ R LE L + C +T D+I +A CPKL++L +S DVT +
Sbjct: 143 KKITDATLSMIVARHEALESLQLGPDFCERITSDAIKAVAFCCPKLKKLRLSGIRDVTSE 202
Query: 123 SLALIGRNCPNLKVL 137
++ + ++CP L L
Sbjct: 203 AIEALAKHCPQLNDL 217