Miyakogusa Predicted Gene

Lj4g3v1983660.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1983660.1 Non Chatacterized Hit- tr|D7MBT8|D7MBT8_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,35.8,7e-16,coiled-coil,NULL; seg,NULL,CUFF.50058.1
         (261 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57910.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   105   4e-23
AT4G30630.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    75   6e-14

>AT5G57910.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G30630.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:23451259-23452463 REVERSE LENGTH=207
          Length = 207

 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 95/256 (37%), Positives = 124/256 (48%), Gaps = 70/256 (27%)

Query: 15  SDLFMDRRAMLRHQSLLQDYEDLHRETEAMRRKLPAIKQKKLTLSADVRFLRQRYXXXXX 74
           S+ F D +   RH SL+QDY +LH ETEAMR++L A++++K TL A+VRFLR+RY     
Sbjct: 13  SNHFEDPKVRFRHHSLMQDYGELHMETEAMRKRLQAVRERKATLMAEVRFLRRRY----- 67

Query: 75  XXXXXXXXXXXXXXXXXIKIQAPTIPKGRNYNRKESTLRPPRIASNMNPPKERSSNGGVE 134
                                           R     +P  I       K R SNGG +
Sbjct: 68  --------------------------------RHLRQDQPQEIK------KVRRSNGGKK 89

Query: 135 NTLQKSGHVFDLNQNARNSSKKDA-SFHNSAPVLDLNH-DRIHSGKETSQTTKSSAPFFD 192
             ++ S            S+K +A + H S P  DLNH ++ H   ET  + K   P FD
Sbjct: 90  IRVEVSP-----------SNKSEAETKHVSLP--DLNHSEKAHD--ETKTSPKRRVPLFD 134

Query: 193 LNQISREEEE----LQGNTEPLWIEEPKRSALRVVS--EEQLNDVKLSVCRNIGDGPSRA 246
           LNQIS EEE+    +  N E   +EE       ++S  E Q  DVK S CRN G+G +  
Sbjct: 135 LNQISGEEEQETEAVDNNQENTRVEESNSCKRLMISSIEMQQKDVKPSSCRNGGNGSN-- 192

Query: 247 VKRKISWQDQV-ALRV 261
            KRKISWQD V ALRV
Sbjct: 193 -KRKISWQDPVAALRV 207


>AT4G30630.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G57910.1); Has 33 Blast hits to 33 proteins in
           10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr4:14951048-14952159 FORWARD
           LENGTH=237
          Length = 237

 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 114/231 (49%), Gaps = 24/231 (10%)

Query: 36  DLHRETEAMRRKLPAIKQKKLTLSADVRFLRQRYXXXXXXXXXXXXXXXXXXXXXXIKIQ 95
           +L +E E  R++L  IKQK+LTL ++VRFLR+RY                        ++
Sbjct: 26  ELEKELEIKRKRLEMIKQKRLTLKSEVRFLRRRYEHLKQDQTLETSPEMLRLSESG-GLE 84

Query: 96  APTIPKGRNYNRKESTLRPPRIASNMNPPKERSSNGGVENTLQKSGHVFDLNQNARNSSK 155
            P  P G    +K+S +R      ++   K +++    +  L  +    DL++  + S  
Sbjct: 85  VPRKPSGE--RKKQSGVRASVPCFDL---KLKNTICNEKEALANNVASCDLDKKRKRSRG 139

Query: 156 KDA-SFHNSAPVLDLNHDRIHSGKETSQTTKSSAPFFDLNQISREEEELQGNTEPLWIEE 214
            D  +F  S P  DLN +   SG +         P FDLNQISREEEE + N E +  E 
Sbjct: 140 SDVLTFPVSLP--DLNGEGNTSGTD-------KVPGFDLNQISREEEEPEVNGEHMVAEA 190

Query: 215 PKRSALRVVSEEQLNDV----KLSVCRNIGDGPSRAVKRKISWQDQVALRV 261
            K + L    + +++D+    KL +C ++    +RAVKRK++WQD VAL V
Sbjct: 191 MKNAML----DNRISDLHVERKLPICGDVEKELNRAVKRKVTWQDPVALSV 237