Miyakogusa Predicted Gene
- Lj4g3v1983620.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1983620.1 tr|C1MW67|C1MW67_MICPC Type II secretory pathway
family protein OS=Micromonas pusilla (strain
CCMP15,46.79,3e-18,SRP54,Signal recognition particle, SRP54 subunit,
GTPase domain; seg,NULL; SRP-alpha_N,Signal recogn,CUFF.50092.1
(615 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G30600.1 | Symbols: | signal recognition particle receptor a... 793 0.0
AT5G03940.1 | Symbols: FFC, 54CP, CPSRP54, SRP54CP | chloroplast... 117 4e-26
AT1G48900.2 | Symbols: | Signal recognition particle, SRP54 sub... 113 5e-25
AT1G48900.1 | Symbols: | Signal recognition particle, SRP54 sub... 112 6e-25
AT1G15310.1 | Symbols: ATHSRP54A, SRP54-1 | signal recognition p... 110 4e-24
AT2G45770.1 | Symbols: CPFTSY, FRD4 | signal recognition particl... 99 7e-21
AT5G49500.1 | Symbols: | Signal recognition particle, SRP54 sub... 93 6e-19
AT2G45770.2 | Symbols: CPFTSY | signal recognition particle rece... 92 9e-19
>AT4G30600.1 | Symbols: | signal recognition particle receptor
alpha subunit family protein | chr4:14938142-14940600
REVERSE LENGTH=634
Length = 634
Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/650 (66%), Positives = 475/650 (73%), Gaps = 51/650 (7%)
Query: 1 MLEQLLIFTRGGLILWSW---GNALKGSPIDTLIRSCLLEERSGAASYTHDS----YSLK 53
MLEQLLIFTRGGLILW+ GNALKGSPIDTLIRSCLLEERSGA S+ +D+ Y+LK
Sbjct: 1 MLEQLLIFTRGGLILWTCKEIGNALKGSPIDTLIRSCLLEERSGAVSFNYDAPGAAYTLK 60
Query: 54 WTFHNDLGLVFVAVYQRILHLLYVDDLLAAVKREFSLIHDPSKKTLYPDFDETFRQLKIE 113
WTFHNDLGLVFVAVYQRILHLLYVDDLL+ VK+ FS ++DP K+ Y DFDETFRQL+IE
Sbjct: 61 WTFHNDLGLVFVAVYQRILHLLYVDDLLSMVKQSFSEVYDP-KRMAYDDFDETFRQLRIE 119
Query: 114 AEARAEDLKKS---SNAVTAI------------GGNRKQQAXXXXXXXXXXXXXXXXXXX 158
AEARAE+L+K+ VT++ GGN++ +
Sbjct: 120 AEARAEELRKTKQVGKPVTSVKKQGQVSKPGLEGGNKRVSSEGGSKKDDGDGGNKAKVST 179
Query: 159 XXXXXXRKLENGDSV---VVANDSNMRKSSVNGKENESSNVGAFDVNKLQKLRSKG---- 211
L NG S + +DS NGKEN SSNV A D++KLQKLRSKG
Sbjct: 180 --------LTNGHSNGNHQMEDDSQETNDLANGKENTSSNV-AVDLSKLQKLRSKGVRGR 230
Query: 212 GDVKKKKITDS-----XXXXXXXXXXXXXNRVWDESTP-ETKLDFTDQVXXXXXXXXRKV 265
G V+K TDS NRVWD++ P ++KLDFTD + V
Sbjct: 231 GGVRK---TDSIGNKSSKVAEPAKKATKKNRVWDDAAPKQSKLDFTDSIDENGNND--HV 285
Query: 266 DYLAKEQGESMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWFSSMFQSIAGKANLE 325
D +A +QGESMM GWFSS+FQSI GKANLE
Sbjct: 286 DIVAADQGESMMDKEEVFSSDSESEDDDEPGSDEKPAQAKKK-GWFSSVFQSITGKANLE 344
Query: 326 KSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVHAAMEEALV 385
++DL PALKALK+RLMTKNVAEEIAEKLCESV ASLEGKKL+SFTRISSTV AAME+ALV
Sbjct: 345 RTDLGPALKALKERLMTKNVAEEIAEKLCESVEASLEGKKLSSFTRISSTVQAAMEDALV 404
Query: 386 RILTPRRSIDILRDIHAAKEHRKPYXXXXXXXXXXXKSTNLAKVAYWLQQHNVSVMMAAC 445
RILTPRRSIDILRD+HAAKE RKPY KSTNLAKVAYWLQQH VSVMMAAC
Sbjct: 405 RILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLQQHKVSVMMAAC 464
Query: 446 DTFRSGAVEQLRTHARRLQIPIFEKGYEKDPALVAKEAIQEASRNGSDVVLVDTAGRMQD 505
DTFRSGAVEQLRTHARRLQIPIFEKGYEKDPA+VAKEAIQEA+RNGSDVVLVDTAGRMQD
Sbjct: 465 DTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQD 524
Query: 506 NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSLTPRLIDGILL 565
NEPLMRALSKLI LN PDLVLFVGEALVGNDAVDQLSKFNQKL+DLSTS PRLIDGILL
Sbjct: 525 NEPLMRALSKLINLNQPDLVLFVGEALVGNDAVDQLSKFNQKLSDLSTSGNPRLIDGILL 584
Query: 566 TKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 615
TKFDTIDDKVGAALSMVYISG+PVMFVGCGQSYTDLKKLNVK+IVKTLLK
Sbjct: 585 TKFDTIDDKVGAALSMVYISGSPVMFVGCGQSYTDLKKLNVKAIVKTLLK 634
>AT5G03940.1 | Symbols: FFC, 54CP, CPSRP54, SRP54CP | chloroplast
signal recognition particle 54 kDa subunit |
chr5:1060265-1063257 REVERSE LENGTH=564
Length = 564
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 147/294 (50%), Gaps = 18/294 (6%)
Query: 309 GWFSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLAS 368
G + + + G+ L K ++ ++ ++ L+ +V+ + + +SV+ G +
Sbjct: 83 GGLEAAWSKLKGEEVLTKDNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVIR 142
Query: 369 FTRISSTVHAAMEEALVRILTPRRSIDILRDIHAAKEHRKPYXXXXXXXXXXXKSTNLAK 428
+ + + + LV+++ S ++ AK P K+T AK
Sbjct: 143 GVKPDQQLVKIVHDELVKLMGGEVS-----ELQFAKSG--PTVILLAGLQGVGKTTVCAK 195
Query: 429 VAYWLQQHNVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPALVAKEAIQEAS 488
+A +L++ S M+ A D +R A++QL ++ +P++ G + PA +AK+ ++EA
Sbjct: 196 LACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTAGTDVKPADIAKQGLKEAK 255
Query: 489 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 548
+N DVV++DTAGR+Q ++ +M L + NP VL V +A+ G +A ++ FN ++
Sbjct: 256 KNNVDVVIMDTAGRLQIDKGMMDELKDVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEI 315
Query: 549 ADLSTSLTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLK 602
I G +LTK D D + GAALS+ +SG P+ VG G+ DL+
Sbjct: 316 G----------ITGAILTKLDG-DSRGGAALSVKEVSGKPIKLVGRGERMEDLE 358
>AT1G48900.2 | Symbols: | Signal recognition particle, SRP54
subunit protein | chr1:18085031-18087743 REVERSE
LENGTH=431
Length = 431
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 11/193 (5%)
Query: 422 KSTNLAKVAYWLQQHNVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPALVAK 481
K+T K AY+ Q+ + DTFR+GA +QL+ +A + +IP + E DP +A
Sbjct: 114 KTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAV 173
Query: 482 EAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 541
E + + D+++VDT+GR + L + ++ PDLV+FV ++ +G A DQ
Sbjct: 174 EGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQA 233
Query: 542 SKFNQKLADLSTSLTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDL 601
F Q +A + +++TK D K G ALS V + +PV+F+G G+ +
Sbjct: 234 QAFKQSVA----------VGAVIITKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEF 282
Query: 602 KKLNVKSIVKTLL 614
+ +VK V LL
Sbjct: 283 EVFDVKPFVSRLL 295
>AT1G48900.1 | Symbols: | Signal recognition particle, SRP54
subunit protein | chr1:18084972-18087743 REVERSE
LENGTH=495
Length = 495
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 11/193 (5%)
Query: 422 KSTNLAKVAYWLQQHNVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPALVAK 481
K+T K AY+ Q+ + DTFR+GA +QL+ +A + +IP + E DP +A
Sbjct: 114 KTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAV 173
Query: 482 EAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 541
E + + D+++VDT+GR + L + ++ PDLV+FV ++ +G A DQ
Sbjct: 174 EGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQA 233
Query: 542 SKFNQKLADLSTSLTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDL 601
F Q +A + +++TK D K G ALS V + +PV+F+G G+ +
Sbjct: 234 QAFKQSVA----------VGAVIITKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEF 282
Query: 602 KKLNVKSIVKTLL 614
+ +VK V LL
Sbjct: 283 EVFDVKPFVSRLL 295
>AT1G15310.1 | Symbols: ATHSRP54A, SRP54-1 | signal recognition
particle 54 kDa subunit | chr1:5269173-5271947 REVERSE
LENGTH=479
Length = 479
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 129/275 (46%), Gaps = 18/275 (6%)
Query: 340 LMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVHAAMEEALVRILTPRRSIDILRD 399
L+ +V+ + EK+ ++ + LA+ + A+ + L R+L P +
Sbjct: 39 LLQSDVSFGLVEKMQTNIKKIVNLDDLAAGHNKRLIIEQAIFKELCRMLDPGKP------ 92
Query: 400 IHAAKEHRKPYXXXXXXXXXXXKSTNLAKVAYWLQQHNVSVMMAACDTFRSGAVEQLRTH 459
A + KP K+T K AY+ Q+ + DTFR+GA +QL+ +
Sbjct: 93 -AFAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQN 151
Query: 460 ARRLQIPIFEKGYEKDPALVAKEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL 519
A + +IP + E DP +A E + + D+++VDT+GR + L + ++
Sbjct: 152 ATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASLFEEMRQVAEA 211
Query: 520 NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSLTPRLIDGILLTKFDTIDDKVGAAL 579
PDLV+FV ++ +G A +Q F + ++ + +++TK D K G AL
Sbjct: 212 TEPDLVIFVMDSSIGQAAFEQAEAFKETVS----------VGAVIITKMDG-HAKGGGAL 260
Query: 580 SMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 614
S V + +PV+F+G G+ + + +VK V LL
Sbjct: 261 SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
>AT2G45770.1 | Symbols: CPFTSY, FRD4 | signal recognition particle
receptor protein, chloroplast (FTSY) |
chr2:18851248-18853402 FORWARD LENGTH=366
Length = 366
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 143/300 (47%), Gaps = 31/300 (10%)
Query: 323 NLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVHAAMEE 382
NL ++D L L++ L+ + +I ++ E + + KL S S + A++E
Sbjct: 89 NLAETD--RVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKS----GSEIKDALKE 142
Query: 383 ALVRILTPRRSIDILRDIHAAKEHRKPYXXXXXXXXXXXKSTNLAKVAYWLQQHNVSVMM 442
+++ +L + S L+ RKP K+T+L K+A+ L+ V+M
Sbjct: 143 SVLEMLAKKNSKTELQ-----LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 197
Query: 443 AACDTFRSGAVEQLRTHARRLQIPI-FEKGYEKDPALVAKEAIQEASRNGSDVVLVDTAG 501
AA DTFR+ A +QL A R I +G + A V +A++ G DVVL DT+G
Sbjct: 198 AAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSG 257
Query: 502 RMQDNEPLM-------RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTS 554
R+ N LM +A+ K++ P+ +L V + G + + Q +FN+ +
Sbjct: 258 RLHTNYSLMEELIACKKAVGKIVS-GAPNEILLVLDGNTGLNMLPQAREFNEVVG----- 311
Query: 555 LTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 614
I G++LTK D + G +S+V G PV F+G G++ DL+ + ++ V +
Sbjct: 312 -----ITGLILTKLDG-SARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIF 365
>AT5G49500.1 | Symbols: | Signal recognition particle, SRP54
subunit protein | chr5:20077556-20080206 REVERSE
LENGTH=497
Length = 497
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 11/173 (6%)
Query: 442 MAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPALVAKEAIQEASRNGSDVVLVDTAG 501
+ DTFR+GA +QL+ +A + +IP + DP +A E + + D+++VDT+G
Sbjct: 136 LVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDRFKKENCDLIIVDTSG 195
Query: 502 RMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSLTPRLID 561
R + L + ++ PDLV+FV ++ +G A +Q F Q +A +
Sbjct: 196 RHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQTVA----------VG 245
Query: 562 GILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 614
+++TK D K G LS V + +PV+F+G G+ + + + K V LL
Sbjct: 246 AVIITKMDG-HAKGGGTLSAVAATKSPVIFIGTGEHMDEFEVFDAKPFVSRLL 297
>AT2G45770.2 | Symbols: CPFTSY | signal recognition particle
receptor protein, chloroplast (FTSY) |
chr2:18851248-18853402 FORWARD LENGTH=373
Length = 373
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 143/307 (46%), Gaps = 38/307 (12%)
Query: 323 NLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVHAAMEE 382
NL ++D L L++ L+ + +I ++ E + + KL S S + A++E
Sbjct: 89 NLAETD--RVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKS----GSEIKDALKE 142
Query: 383 ALVRILTPRRSIDILRDIHAAKEHRKPYXXXXXXXXXXXKSTNL-------AKVAYWLQQ 435
+++ +L + S L+ RKP K+T+L K+A+ L+
Sbjct: 143 SVLEMLAKKNSKTELQ-----LGFRKPAVIMIVGVNGGGKTTSLDSGFCFSGKLAHRLKN 197
Query: 436 HNVSVMMAACDTFRSGAVEQLRTHARRLQIPIF-EKGYEKDPALVAKEAIQEASRNGSDV 494
V+MAA DTFR+ A +QL A R I +G + A V +A++ G DV
Sbjct: 198 EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDV 257
Query: 495 VLVDTAGRMQDNEPLM-------RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 547
VL DT+GR+ N LM +A+ K++ P+ +L V + G + + Q +FN+
Sbjct: 258 VLCDTSGRLHTNYSLMEELIACKKAVGKIVS-GAPNEILLVLDGNTGLNMLPQAREFNEV 316
Query: 548 LADLSTSLTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVK 607
+ I G++LTK D + G +S+V G PV F+G G++ DL+ + +
Sbjct: 317 VG----------ITGLILTKLDG-SARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPE 365
Query: 608 SIVKTLL 614
+ V +
Sbjct: 366 AFVNAIF 372