Miyakogusa Predicted Gene

Lj4g3v1983420.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1983420.1 tr|I1P547|I1P547_ORYGL Ubiquitin
carboxyl-terminal hydrolase OS=Oryza glaberrima PE=3
SV=1,40.54,1e-17,UCH,Peptidase C19, ubiquitin carboxyl-terminal
hydrolase 2; Cysteine proteinases,NULL; seg,NULL,CUFF.50041.1
         (486 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57990.1 | Symbols: UBP23 | ubiquitin-specific protease 23 | ...    75   1e-13

>AT5G57990.1 | Symbols: UBP23 | ubiquitin-specific protease 23 |
           chr5:23470218-23473997 REVERSE LENGTH=859
          Length = 859

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 74/113 (65%), Gaps = 6/113 (5%)

Query: 379 QDGKRDQ----MHNSLMSMLTRGLEETVVARWDDVEIASSRVMDSRNDKIKDIGYVGDEW 434
           Q+ KR +    +    +++LTRG+ ETVVA+WD+ EI++S+   S+++    IGYV DEW
Sbjct: 748 QNAKRKRESVLLQKEAVNILTRGVPETVVAKWDE-EISASQKRGSKSEGASSIGYVADEW 806

Query: 435 DEELDKGKRKKLRTFKHSFDGPNIFQEIATEKFKSKRAKLDHS-SSANPPFRI 486
           DEE D+GK+KK+R  + S+ GPN FQ +A+++ K  + K   S + A   +RI
Sbjct: 807 DEEYDRGKKKKIRIKEESYRGPNPFQMLASKRQKETKKKWTQSITDAKTAYRI 859



 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 43/58 (74%), Gaps = 3/58 (5%)

Query: 1   MWYTLDDNRVSHVSEREVLNQQAYMLFYVRDRKSIVSRKSLDIVKNGIRDSSTSNHVS 58
           MWY+LDDNRV  VSE+ V NQ+AYMLFYVRDR++ V + S+ +VK   ++S  +N  S
Sbjct: 380 MWYSLDDNRVVQVSEKTVFNQKAYMLFYVRDRQNAVPKNSVPVVK---KESFATNRAS 434