Miyakogusa Predicted Gene

Lj4g3v1983310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1983310.1 tr|A9TI05|A9TI05_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_145843,47.92,2e-18,no description,Cytochrome c oxidase,
subunit VIb; COX6B,Cytochrome c oxidase, subunit VIb,CUFF.50028.1
         (101 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58005.2 | Symbols:  | Cytochrome c oxidase, subunit Vib fami...   156   3e-39
AT5G58005.1 | Symbols:  | Cytochrome c oxidase, subunit Vib fami...   156   3e-39

>AT5G58005.2 | Symbols:  | Cytochrome c oxidase, subunit Vib family
           protein | chr5:23482234-23482757 FORWARD LENGTH=116
          Length = 116

 Score =  156 bits (394), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 71/100 (71%), Positives = 84/100 (84%)

Query: 1   MALEAYAAGNHDKINADVLSKAREACYKARDAFYACLDKESDKKPTEIASVGLIYPAECK 60
           MAL+ YA+ N + ++ DVL KAR+ACYKARDAFYACL+KES KKPTEIA+VGL+YP EC 
Sbjct: 1   MALDTYASSNPNDVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECS 60

Query: 61  RSRDEFVKQCRSSWVKHFDRQYCQNKRVQRLLDDKGSRRG 100
            SR +FV  CRSSWVKHFDR+YC+NKRVQRLLDD   R+G
Sbjct: 61  NSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDERKG 100


>AT5G58005.1 | Symbols:  | Cytochrome c oxidase, subunit Vib family
           protein | chr5:23482234-23482757 FORWARD LENGTH=116
          Length = 116

 Score =  156 bits (394), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 71/100 (71%), Positives = 84/100 (84%)

Query: 1   MALEAYAAGNHDKINADVLSKAREACYKARDAFYACLDKESDKKPTEIASVGLIYPAECK 60
           MAL+ YA+ N + ++ DVL KAR+ACYKARDAFYACL+KES KKPTEIA+VGL+YP EC 
Sbjct: 1   MALDTYASSNPNDVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECS 60

Query: 61  RSRDEFVKQCRSSWVKHFDRQYCQNKRVQRLLDDKGSRRG 100
            SR +FV  CRSSWVKHFDR+YC+NKRVQRLLDD   R+G
Sbjct: 61  NSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDERKG 100