Miyakogusa Predicted Gene

Lj4g3v1969860.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1969860.1 Non Chatacterized Hit- tr|B5ILM4|B5ILM4_9CHRO
Putative uncharacterized protein OS=Cyanobium sp. PCC
,34.72,1e-18,seg,NULL; DUF1817,Protein of unknown function
DUF1817,CUFF.49988.1
         (252 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G47910.1 | Symbols: CRR6 | chlororespiratory reduction 6 | ch...   304   4e-83
AT2G47910.2 | Symbols: CRR6 | chlororespiratory reduction 6 | ch...   280   6e-76

>AT2G47910.1 | Symbols: CRR6 | chlororespiratory reduction 6 |
           chr2:19614741-19615559 FORWARD LENGTH=246
          Length = 246

 Score =  304 bits (779), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 145/202 (71%), Positives = 173/202 (85%), Gaps = 4/202 (1%)

Query: 50  VAVSVAFNPQGNFDLSLSDYD-DAPEVTPPMPPSEGRFDVFIDNDAITRLDLSPFQSATG 108
           VAVSVAFNP GNFD+S  + D D+ +V PPMPP+ GR++V IDND+I RLDLSPFQ A G
Sbjct: 44  VAVSVAFNPSGNFDISAFENDQDSDKVEPPMPPTTGRYEVVIDNDSIGRLDLSPFQRAIG 103

Query: 109 MKDPLS---VKPKEFIDRTIGFTINYKKEDPRDPRELSEFPDIRLWFVRLDATYPWLPVL 165
           +  P      +PK ++DRTIGFTINYK+EDP DPRELSE+PD+RLWFVRLDA YPWLP+L
Sbjct: 104 ITSPDDFGVAEPKRYLDRTIGFTINYKREDPGDPRELSEYPDVRLWFVRLDAMYPWLPLL 163

Query: 166 LDWRAGELARYAAMLVPHQMNMKMGVVFNPEALELFVMKKVFVVYSWLKHHNIPKPELKA 225
           LDWRAGELARYAAMLVPHQM+++MGVVFNPEALELFVM KVFVVY WLK H +PKP LK 
Sbjct: 164 LDWRAGELARYAAMLVPHQMSLRMGVVFNPEALELFVMNKVFVVYPWLKRHGVPKPRLKT 223

Query: 226 NNMARMLGFGIGNELYDLVENH 247
           ++MARMLGFGIG+EL+DL++++
Sbjct: 224 SDMARMLGFGIGDELFDLIDHN 245


>AT2G47910.2 | Symbols: CRR6 | chlororespiratory reduction 6 |
           chr2:19614963-19615559 FORWARD LENGTH=198
          Length = 198

 Score =  280 bits (716), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 130/180 (72%), Positives = 156/180 (86%), Gaps = 3/180 (1%)

Query: 71  DAPEVTPPMPPSEGRFDVFIDNDAITRLDLSPFQSATGMKDPLS---VKPKEFIDRTIGF 127
           D+ +V PPMPP+ GR++V IDND+I RLDLSPFQ A G+  P      +PK ++DRTIGF
Sbjct: 18  DSDKVEPPMPPTTGRYEVVIDNDSIGRLDLSPFQRAIGITSPDDFGVAEPKRYLDRTIGF 77

Query: 128 TINYKKEDPRDPRELSEFPDIRLWFVRLDATYPWLPVLLDWRAGELARYAAMLVPHQMNM 187
           TINYK+EDP DPRELSE+PD+RLWFVRLDA YPWLP+LLDWRAGELARYAAMLVPHQM++
Sbjct: 78  TINYKREDPGDPRELSEYPDVRLWFVRLDAMYPWLPLLLDWRAGELARYAAMLVPHQMSL 137

Query: 188 KMGVVFNPEALELFVMKKVFVVYSWLKHHNIPKPELKANNMARMLGFGIGNELYDLVENH 247
           +MGVVFNPEALELFVM KVFVVY WLK H +PKP LK ++MARMLGFGIG+EL+DL++++
Sbjct: 138 RMGVVFNPEALELFVMNKVFVVYPWLKRHGVPKPRLKTSDMARMLGFGIGDELFDLIDHN 197