Miyakogusa Predicted Gene

Lj4g3v1958780.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1958780.2 Non Chatacterized Hit- tr|I3SP13|I3SP13_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,68.68,0,Beta-Casp,Beta-Casp domain; RMMBL,RNA-metabolising
metallo-beta-lactamase; INTEGRATOR COMPLEX SUBUNI,CUFF.49992.2
         (296 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G01730.1 | Symbols: ATCPSF73-II, EDA26, CPSF73-II | cleavage ...   256   9e-69
AT1G61010.3 | Symbols: CPSF73-I | cleavage and polyadenylation s...    76   2e-14
AT1G61010.2 | Symbols: CPSF73-I | cleavage and polyadenylation s...    76   2e-14
AT1G61010.1 | Symbols: CPSF73-I | cleavage and polyadenylation s...    76   2e-14

>AT2G01730.1 | Symbols: ATCPSF73-II, EDA26, CPSF73-II | cleavage and
           polyadenylation specificity factor 73 kDa subunit-II |
           chr2:320597-323845 FORWARD LENGTH=613
          Length = 613

 Score =  256 bits (655), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 134/263 (50%), Positives = 164/263 (62%), Gaps = 50/263 (19%)

Query: 34  VHHFERSMINAPGPCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGHRLM 93
           V  F+RS+I+APGPCVLFATPGM+  GFSLEVFKHWAPS  NL+ LPGY VAGTVGH+LM
Sbjct: 304 VKDFDRSLIHAPGPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVALPGYSVAGTVGHKLM 363

Query: 94  SGKATKVDVDPDTQIDVRCQIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMALL 153
           +GK T VD+   T++DVRC++HQ+AFSPHTD+KGIMDL KFLSPK+V+LVHGEKP M +L
Sbjct: 364 AGKPTTVDLYNGTKVDVRCKVHQVAFSPHTDAKGIMDLTKFLSPKNVVLVHGEKPSMMIL 423

Query: 154 KEKIHSELGIPCHDPANHETICISSTPYVKTEASGTFIQNCLNPNFKFQKCSSVDECDST 213
           KEKI SEL IPC  PAN ET+  +ST Y+K  AS  F+++C NPNFKF   + +   D  
Sbjct: 424 KEKITSELDIPCFVPANGETVSFASTTYIKANASDMFLKSCSNPNFKFSNSTQLRVTDHR 483

Query: 214 LTEKNLMPELQVKNCLNPNFKFQKCSSVDECDSTLTEKNLMPELQVKDERVAEGVLVMEK 273
             +  L+ E                                                  K
Sbjct: 484 TADGVLVIE--------------------------------------------------K 493

Query: 274 TKKAKIVHQDELLLMLGEKKQGV 296
           +KKAKIVHQDE+  +L EK   V
Sbjct: 494 SKKAKIVHQDEISEVLHEKNHVV 516


>AT1G61010.3 | Symbols: CPSF73-I | cleavage and polyadenylation
           specificity factor 73-I | chr1:22474954-22477660 REVERSE
           LENGTH=693
          Length = 693

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 43  NAPGPCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGHRLMSGKATKVDV 102
           N  GP V+ ATPG +  G S ++F  W   + N   +PGY V GT+   +++ +  +V +
Sbjct: 328 NDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPGYMVEGTLAKTIIN-EPKEVTL 386

Query: 103 DPDTQIDVRCQIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMALLKEKIHSEL 161
                  +  Q+H ++FS H D       +K L P ++ILVHGE  +M  LK+K+ +E 
Sbjct: 387 MNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGEANEMMRLKQKLLTEF 445


>AT1G61010.2 | Symbols: CPSF73-I | cleavage and polyadenylation
           specificity factor 73-I | chr1:22474954-22477660 REVERSE
           LENGTH=693
          Length = 693

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 43  NAPGPCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGHRLMSGKATKVDV 102
           N  GP V+ ATPG +  G S ++F  W   + N   +PGY V GT+   +++ +  +V +
Sbjct: 328 NDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPGYMVEGTLAKTIIN-EPKEVTL 386

Query: 103 DPDTQIDVRCQIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMALLKEKIHSEL 161
                  +  Q+H ++FS H D       +K L P ++ILVHGE  +M  LK+K+ +E 
Sbjct: 387 MNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGEANEMMRLKQKLLTEF 445


>AT1G61010.1 | Symbols: CPSF73-I | cleavage and polyadenylation
           specificity factor 73-I | chr1:22474954-22477660 REVERSE
           LENGTH=693
          Length = 693

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 1/119 (0%)

Query: 43  NAPGPCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGHRLMSGKATKVDV 102
           N  GP V+ ATPG +  G S ++F  W   + N   +PGY V GT+   +++ +  +V +
Sbjct: 328 NDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPGYMVEGTLAKTIIN-EPKEVTL 386

Query: 103 DPDTQIDVRCQIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMALLKEKIHSEL 161
                  +  Q+H ++FS H D       +K L P ++ILVHGE  +M  LK+K+ +E 
Sbjct: 387 MNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGEANEMMRLKQKLLTEF 445