Miyakogusa Predicted Gene
- Lj4g3v1958780.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1958780.1 Non Chatacterized Hit- tr|C3ZLX0|C3ZLX0_BRAFL
Putative uncharacterized protein OS=Branchiostoma
flor,39.47,3e-19,INTEGRATOR COMPLEX SUBUNIT 11,NULL; CLEAVAGE AND
POLYADENYLATION SPECIFICITY FACTOR,NULL; Beta-Casp,,CUFF.49992.1
(156 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G01730.1 | Symbols: ATCPSF73-II, EDA26, CPSF73-II | cleavage ... 130 3e-31
AT1G61010.3 | Symbols: CPSF73-I | cleavage and polyadenylation s... 50 4e-07
AT1G61010.2 | Symbols: CPSF73-I | cleavage and polyadenylation s... 50 4e-07
AT1G61010.1 | Symbols: CPSF73-I | cleavage and polyadenylation s... 50 4e-07
>AT2G01730.1 | Symbols: ATCPSF73-II, EDA26, CPSF73-II | cleavage and
polyadenylation specificity factor 73 kDa subunit-II |
chr2:320597-323845 FORWARD LENGTH=613
Length = 613
Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 72/86 (83%)
Query: 34 VHHFERSMINAPGPCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGHRLM 93
V F+RS+I+APGPCVLFATPGM+ GFSLEVFKHWAPS NL+ LPGY VAGTVGH+LM
Sbjct: 304 VKDFDRSLIHAPGPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVALPGYSVAGTVGHKLM 363
Query: 94 SGKATKVDVDPDTQIDVRCQVHFISY 119
+GK T VD+ T++DVRC+VH +++
Sbjct: 364 AGKPTTVDLYNGTKVDVRCKVHQVAF 389
>AT1G61010.3 | Symbols: CPSF73-I | cleavage and polyadenylation
specificity factor 73-I | chr1:22474954-22477660 REVERSE
LENGTH=693
Length = 693
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 43 NAPGPCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGHRLMSGKATKVDV 102
N GP V+ ATPG + G S ++F W + N +PGY V GT+ +++ + +V +
Sbjct: 328 NDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPGYMVEGTLAKTIIN-EPKEVTL 386
Query: 103 DPDTQIDVRCQVHFISY 119
+ QVH+IS+
Sbjct: 387 MNGLTAPLNMQVHYISF 403
>AT1G61010.2 | Symbols: CPSF73-I | cleavage and polyadenylation
specificity factor 73-I | chr1:22474954-22477660 REVERSE
LENGTH=693
Length = 693
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 43 NAPGPCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGHRLMSGKATKVDV 102
N GP V+ ATPG + G S ++F W + N +PGY V GT+ +++ + +V +
Sbjct: 328 NDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPGYMVEGTLAKTIIN-EPKEVTL 386
Query: 103 DPDTQIDVRCQVHFISY 119
+ QVH+IS+
Sbjct: 387 MNGLTAPLNMQVHYISF 403
>AT1G61010.1 | Symbols: CPSF73-I | cleavage and polyadenylation
specificity factor 73-I | chr1:22474954-22477660 REVERSE
LENGTH=693
Length = 693
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 43 NAPGPCVLFATPGMISGGFSLEVFKHWAPSENNLITLPGYCVAGTVGHRLMSGKATKVDV 102
N GP V+ ATPG + G S ++F W + N +PGY V GT+ +++ + +V +
Sbjct: 328 NDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPGYMVEGTLAKTIIN-EPKEVTL 386
Query: 103 DPDTQIDVRCQVHFISY 119
+ QVH+IS+
Sbjct: 387 MNGLTAPLNMQVHYISF 403