Miyakogusa Predicted Gene

Lj4g3v1947720.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1947720.1 Non Chatacterized Hit- tr|C5XWX7|C5XWX7_SORBI
Putative uncharacterized protein Sb04g005696 (Fragment,51.52,4e-18,
,CUFF.50049.1
         (144 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G20350.1 | Symbols: TIP1 | Ankyrin repeat family protein with...   107   4e-24
AT2G14255.1 | Symbols:  | Ankyrin repeat family protein with DHH...    70   3e-13

>AT5G20350.1 | Symbols: TIP1 | Ankyrin repeat family protein with
           DHHC zinc finger domain | chr5:6876772-6881102 FORWARD
           LENGTH=620
          Length = 620

 Score =  107 bits (266), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 48/72 (66%), Positives = 55/72 (76%), Gaps = 1/72 (1%)

Query: 1   MANVMRYSYLRGPGGRFRNPYDHGIKKNCSDFLINGYNEDVEVVEE-LGQSEEGVGMMHM 59
           MAN +RYSYLRGPGGRFRNPYD G ++NCSDFL+ GYNED+E  EE   Q  EG+ MM M
Sbjct: 496 MANALRYSYLRGPGGRFRNPYDLGCRRNCSDFLVKGYNEDIECHEEDATQRPEGISMMQM 555

Query: 60  TRNSNLANGDSH 71
            RN NL NG+ H
Sbjct: 556 QRNPNLQNGNGH 567


>AT2G14255.1 | Symbols:  | Ankyrin repeat family protein with DHHC
           zinc finger domain | chr2:6036974-6040892 FORWARD
           LENGTH=536
          Length = 536

 Score = 70.5 bits (171), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 35/42 (83%)

Query: 3   NVMRYSYLRGPGGRFRNPYDHGIKKNCSDFLINGYNEDVEVV 44
           N  R+SYLRGP GRF NPY+HG+++NC+DFL++GY  D EVV
Sbjct: 490 NAKRFSYLRGPDGRFYNPYNHGLRRNCTDFLVHGYTRDDEVV 531