Miyakogusa Predicted Gene

Lj4g3v1934510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1934510.1 Non Chatacterized Hit- tr|I1MU29|I1MU29_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,95.98,0,SUBFAMILY NOT
NAMED,NULL; ARP2/3 COMPLEX 21 KD SUBUNIT,ARP2/3 complex, p21-Arc
subunit; Arp2/3 compl,CUFF.49975.1
         (174 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G60430.2 | Symbols: ARPC3 | actin-related protein C3 | chr1:2...   300   3e-82
AT1G60430.1 | Symbols: ARPC3 | actin-related protein C3 | chr1:2...   300   3e-82

>AT1G60430.2 | Symbols: ARPC3 | actin-related protein C3 |
           chr1:22264797-22265682 REVERSE LENGTH=174
          Length = 174

 Score =  300 bits (768), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 144/173 (83%), Positives = 154/173 (89%)

Query: 1   MVYHSSFVDEDGVNKACGCPLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFD 60
           MVYHSSFVDE+GV KACGCPLLPLKSHIKGPAPVS+QD+TDIVDEAITFFRANVFF NFD
Sbjct: 1   MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPVSEQDKTDIVDEAITFFRANVFFTNFD 60

Query: 61  IKSPADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGESXXXXXXXXXX 120
           IKSPADKLLIYLTFYINVALKRLEG RTLA GTKAIINLGLE +PVPGE+          
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSL 120

Query: 121 XQSHKEAELFRNYLKQIREETSGRLLNVAYRPNGTPNKWWLAFAKRKFMNIII 173
            QS  EAELFRNYLKQ+REETSGRLL+VAYR NGTPNKWWLAFAKRKFMN+++
Sbjct: 121 PQSQDEAELFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNVVV 173


>AT1G60430.1 | Symbols: ARPC3 | actin-related protein C3 |
           chr1:22264797-22265682 REVERSE LENGTH=174
          Length = 174

 Score =  300 bits (768), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 144/173 (83%), Positives = 154/173 (89%)

Query: 1   MVYHSSFVDEDGVNKACGCPLLPLKSHIKGPAPVSDQDRTDIVDEAITFFRANVFFRNFD 60
           MVYHSSFVDE+GV KACGCPLLPLKSHIKGPAPVS+QD+TDIVDEAITFFRANVFF NFD
Sbjct: 1   MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPVSEQDKTDIVDEAITFFRANVFFTNFD 60

Query: 61  IKSPADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGESXXXXXXXXXX 120
           IKSPADKLLIYLTFYINVALKRLEG RTLA GTKAIINLGLE +PVPGE+          
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSL 120

Query: 121 XQSHKEAELFRNYLKQIREETSGRLLNVAYRPNGTPNKWWLAFAKRKFMNIII 173
            QS  EAELFRNYLKQ+REETSGRLL+VAYR NGTPNKWWLAFAKRKFMN+++
Sbjct: 121 PQSQDEAELFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNVVV 173