Miyakogusa Predicted Gene

Lj4g3v1932140.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1932140.1 Non Chatacterized Hit- tr|I1I0I1|I1I0I1_BRADI
Uncharacterized protein OS=Brachypodium distachyon GN=,71.43,2e-18,GB
DEF: VPS13-LIKE PROTEIN,NULL; VACUOLAR PROTEIN SORTING-ASSOCIATED
PROTEIN (VPS13),Vacuolar
protei,NODE_46033_length_142_cov_19.838028.path2.1
         (56 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24740.1 | Symbols:  | Protein of unknown function (DUF1162) ...    91   1e-19

>AT5G24740.1 | Symbols:  | Protein of unknown function (DUF1162) |
            chr5:8470073-8489703 REVERSE LENGTH=3464
          Length = 3464

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/56 (64%), Positives = 47/56 (83%)

Query: 1    MASWESIQQILIRHYNRQLLHETYKLFGSAGFIGNPLGFARSIGHGIRDFLSVPAK 56
            + SWES Q+IL+ HY RQ+LHE YK+FGSAG IGNP+GFAR++  GI+DFLS P++
Sbjct: 3080 ITSWESFQEILVGHYTRQILHEIYKVFGSAGVIGNPMGFARNVAFGIKDFLSAPSR 3135