Miyakogusa Predicted Gene

Lj4g3v1932130.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1932130.1 tr|A0C9X9|A0C9X9_PARTE Chromosome undetermined
scaffold_16, whole genome shotgun sequence
OS=Paramec,29.73,0.00000000000004,ATG_C,Autophagy-related, C-terminal;
GB DEF: VPS13-LIKE PROTEIN,NULL; VACUOLAR PROTEIN
SORTING-ASSOC,NODE_56425_length_416_cov_67.653847.path2.1
         (136 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24740.1 | Symbols:  | Protein of unknown function (DUF1162) ...   199   5e-52
AT1G48090.1 | Symbols:  | calcium-dependent lipid-binding family...    47   3e-06

>AT5G24740.1 | Symbols:  | Protein of unknown function (DUF1162) |
            chr5:8470073-8489703 REVERSE LENGTH=3464
          Length = 3464

 Score =  199 bits (506), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 98/135 (72%), Positives = 115/135 (85%)

Query: 2    QSPTGLIMGMAQGTTSLLSNTLYAISDATSQFSKAARKGIVAFTYDDQAVSRVEKHQATV 61
            +SP G+I GMA GTTSL S+T+YA+SDA +QFSKAA KGIVAFT++D  V+R+EK Q   
Sbjct: 3139 KSPAGIIQGMAHGTTSLFSSTIYALSDAATQFSKAAHKGIVAFTFNDHDVARMEKQQLGE 3198

Query: 62   SSDSKGVINEVLEGLTGLLQSPIRGAERHGLPGVLSGVALGITGLVAKPAASILEVTGKT 121
             S SKGVI EV EGLTGLLQSPIRGAE+HGLPGV+SGVA+GITGLVA+P ASILEVTGKT
Sbjct: 3199 GSRSKGVIGEVFEGLTGLLQSPIRGAEKHGLPGVISGVAMGITGLVARPTASILEVTGKT 3258

Query: 122  ALSIRNRSKPNQLRS 136
            A SIRNRS+ + +RS
Sbjct: 3259 AQSIRNRSRIHNIRS 3273


>AT1G48090.1 | Symbols:  | calcium-dependent lipid-binding family
            protein | chr1:17732582-17758194 REVERSE LENGTH=4146
          Length = 4146

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 39   KGIVAFTYDDQAVSRVEKHQATVSSDSKGVINE--------VLEGLTGLLQSPIRGAERH 90
            +GI A + D + +   ++ +     D   +I E        +  G+TG+L  P+ GA+  
Sbjct: 3814 QGIAALSMDKKFIQSRQRQENKGVEDFGDIIREGGGALAKGLFRGVTGILTKPLEGAKSS 3873

Query: 91   GLPGVLSGVALGITGLVAKPAASILEVTGKT 121
            G+ G +SG   GI G  A+P + +L++  KT
Sbjct: 3874 GVEGFVSGFGKGIIGAAAQPVSGVLDLLSKT 3904