Miyakogusa Predicted Gene

Lj4g3v1893170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1893170.1 Non Chatacterized Hit- tr|C0PG81|C0PG81_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,55.45,3e-19,seg,NULL;
GTP-BINDING PROTEIN 2,Nucleolar GTP-binding protein 2; GTP-BINDING
PROTEIN-RELATED,NULL,CUFF.49927.1
         (122 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G52980.1 | Symbols:  | GTP-binding family protein | chr1:1973...    61   2e-10

>AT1G52980.1 | Symbols:  | GTP-binding family protein |
           chr1:19737493-19740201 FORWARD LENGTH=576
          Length = 576

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 38/49 (77%), Gaps = 2/49 (4%)

Query: 1   MTAAKMVLHDWQRGKIPFFVPPPQQEDLSEEP--IVNGLDVDDGVDSNQ 47
           MT AKM+LHDWQRG+IPFFVPPP+ ++++ E   IV G+D +   D++Q
Sbjct: 440 MTGAKMILHDWQRGRIPFFVPPPKLDNVASESEVIVPGIDKEAIADNSQ 488