Miyakogusa Predicted Gene

Lj4g3v1881780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1881780.1 Non Chatacterized Hit- tr|D8RTY6|D8RTY6_SELML
Putative uncharacterized protein OS=Selaginella
moelle,31.66,1e-17,SNAPc_SNAP43,Small nuclear RNA activating complex
(SNAPc), subunit SNAP43; SMALL NUCLEAR RNA ACTIVAT,CUFF.49907.1
         (279 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G53270.5 | Symbols:  | Small nuclear RNA activating complex (...   234   4e-62
AT3G53270.2 | Symbols:  | Small nuclear RNA activating complex (...   234   4e-62
AT3G53270.3 | Symbols:  | Small nuclear RNA activating complex (...   234   4e-62
AT3G53270.4 | Symbols:  | Small nuclear RNA activating complex (...   234   4e-62
AT3G53270.1 | Symbols:  | Small nuclear RNA activating complex (...   234   4e-62
AT3G53270.6 | Symbols:  | Small nuclear RNA activating complex (...   229   2e-60

>AT3G53270.5 | Symbols:  | Small nuclear RNA activating complex
           (SNAPc), subunit SNAP43 protein | chr3:19750406-19752168
           REVERSE LENGTH=280
          Length = 280

 Score =  234 bits (598), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 123/252 (48%), Positives = 161/252 (63%), Gaps = 3/252 (1%)

Query: 1   MNIDYFKKDIDELIGQFAQDESTTLADMKRVWLSKKFSYIYEAFPSTNLAFFMQSLYAHS 60
           MN+  FK+DIDELI +F +D+ TT ADMK VWLS+KFS+IYEA P++NLAFFMQSLY H+
Sbjct: 1   MNLSPFKRDIDELIDEFVEDDLTTFADMKSVWLSRKFSHIYEASPNSNLAFFMQSLYVHT 60

Query: 61  IGYMVGAGSLSVRXXXXXXXXXXXETQPFKPPFKIYLSLGELKKVRILXXXXXXXXXXXX 120
           IG+MV   S S R           E QPFKP F+IY+SL EL K R L            
Sbjct: 61  IGHMVSIDSFSRRLGGLYCLYCLHEIQPFKPKFRIYISLQELGKFRDLVVEAKDKGVEIA 120

Query: 121 XXXXXRMLERNMFLFGAVDLAEGAVTETVXXXXXXXNASIRVAYETLFKNTPINDYIHMD 180
                +ML+ NM +FGAVD  E + T+T+       NA +R AYE L  +T IN +IH+D
Sbjct: 121 AAVAKKMLDENMLIFGAVD--ETSATKTIHQLTELQNARVRFAYEKLICDTSINQFIHLD 178

Query: 181 LGMEVDLNNLKKISSEYAEAKHLAAKEASSILDAENIKRIAGNKELMLGDVFEEIANDWV 240
           +G EVDLN+L K+S EYAEAK  A + A  I++ ++IK I+  KELM G+  E++  +W 
Sbjct: 179 MGKEVDLNSLDKMSIEYAEAKKRAVEGAGEIMEIDDIKHISEEKELM-GERMEKLKEEWD 237

Query: 241 IQKQAFYKQTGL 252
            Q+  FY+QT L
Sbjct: 238 SQRLYFYEQTKL 249


>AT3G53270.2 | Symbols:  | Small nuclear RNA activating complex
           (SNAPc), subunit SNAP43 protein | chr3:19750406-19752168
           REVERSE LENGTH=280
          Length = 280

 Score =  234 bits (598), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 123/252 (48%), Positives = 161/252 (63%), Gaps = 3/252 (1%)

Query: 1   MNIDYFKKDIDELIGQFAQDESTTLADMKRVWLSKKFSYIYEAFPSTNLAFFMQSLYAHS 60
           MN+  FK+DIDELI +F +D+ TT ADMK VWLS+KFS+IYEA P++NLAFFMQSLY H+
Sbjct: 1   MNLSPFKRDIDELIDEFVEDDLTTFADMKSVWLSRKFSHIYEASPNSNLAFFMQSLYVHT 60

Query: 61  IGYMVGAGSLSVRXXXXXXXXXXXETQPFKPPFKIYLSLGELKKVRILXXXXXXXXXXXX 120
           IG+MV   S S R           E QPFKP F+IY+SL EL K R L            
Sbjct: 61  IGHMVSIDSFSRRLGGLYCLYCLHEIQPFKPKFRIYISLQELGKFRDLVVEAKDKGVEIA 120

Query: 121 XXXXXRMLERNMFLFGAVDLAEGAVTETVXXXXXXXNASIRVAYETLFKNTPINDYIHMD 180
                +ML+ NM +FGAVD  E + T+T+       NA +R AYE L  +T IN +IH+D
Sbjct: 121 AAVAKKMLDENMLIFGAVD--ETSATKTIHQLTELQNARVRFAYEKLICDTSINQFIHLD 178

Query: 181 LGMEVDLNNLKKISSEYAEAKHLAAKEASSILDAENIKRIAGNKELMLGDVFEEIANDWV 240
           +G EVDLN+L K+S EYAEAK  A + A  I++ ++IK I+  KELM G+  E++  +W 
Sbjct: 179 MGKEVDLNSLDKMSIEYAEAKKRAVEGAGEIMEIDDIKHISEEKELM-GERMEKLKEEWD 237

Query: 241 IQKQAFYKQTGL 252
            Q+  FY+QT L
Sbjct: 238 SQRLYFYEQTKL 249


>AT3G53270.3 | Symbols:  | Small nuclear RNA activating complex
           (SNAPc), subunit SNAP43 protein | chr3:19750406-19752168
           REVERSE LENGTH=280
          Length = 280

 Score =  234 bits (598), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 123/252 (48%), Positives = 161/252 (63%), Gaps = 3/252 (1%)

Query: 1   MNIDYFKKDIDELIGQFAQDESTTLADMKRVWLSKKFSYIYEAFPSTNLAFFMQSLYAHS 60
           MN+  FK+DIDELI +F +D+ TT ADMK VWLS+KFS+IYEA P++NLAFFMQSLY H+
Sbjct: 1   MNLSPFKRDIDELIDEFVEDDLTTFADMKSVWLSRKFSHIYEASPNSNLAFFMQSLYVHT 60

Query: 61  IGYMVGAGSLSVRXXXXXXXXXXXETQPFKPPFKIYLSLGELKKVRILXXXXXXXXXXXX 120
           IG+MV   S S R           E QPFKP F+IY+SL EL K R L            
Sbjct: 61  IGHMVSIDSFSRRLGGLYCLYCLHEIQPFKPKFRIYISLQELGKFRDLVVEAKDKGVEIA 120

Query: 121 XXXXXRMLERNMFLFGAVDLAEGAVTETVXXXXXXXNASIRVAYETLFKNTPINDYIHMD 180
                +ML+ NM +FGAVD  E + T+T+       NA +R AYE L  +T IN +IH+D
Sbjct: 121 AAVAKKMLDENMLIFGAVD--ETSATKTIHQLTELQNARVRFAYEKLICDTSINQFIHLD 178

Query: 181 LGMEVDLNNLKKISSEYAEAKHLAAKEASSILDAENIKRIAGNKELMLGDVFEEIANDWV 240
           +G EVDLN+L K+S EYAEAK  A + A  I++ ++IK I+  KELM G+  E++  +W 
Sbjct: 179 MGKEVDLNSLDKMSIEYAEAKKRAVEGAGEIMEIDDIKHISEEKELM-GERMEKLKEEWD 237

Query: 241 IQKQAFYKQTGL 252
            Q+  FY+QT L
Sbjct: 238 SQRLYFYEQTKL 249


>AT3G53270.4 | Symbols:  | Small nuclear RNA activating complex
           (SNAPc), subunit SNAP43 protein | chr3:19750406-19752168
           REVERSE LENGTH=280
          Length = 280

 Score =  234 bits (598), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 123/252 (48%), Positives = 161/252 (63%), Gaps = 3/252 (1%)

Query: 1   MNIDYFKKDIDELIGQFAQDESTTLADMKRVWLSKKFSYIYEAFPSTNLAFFMQSLYAHS 60
           MN+  FK+DIDELI +F +D+ TT ADMK VWLS+KFS+IYEA P++NLAFFMQSLY H+
Sbjct: 1   MNLSPFKRDIDELIDEFVEDDLTTFADMKSVWLSRKFSHIYEASPNSNLAFFMQSLYVHT 60

Query: 61  IGYMVGAGSLSVRXXXXXXXXXXXETQPFKPPFKIYLSLGELKKVRILXXXXXXXXXXXX 120
           IG+MV   S S R           E QPFKP F+IY+SL EL K R L            
Sbjct: 61  IGHMVSIDSFSRRLGGLYCLYCLHEIQPFKPKFRIYISLQELGKFRDLVVEAKDKGVEIA 120

Query: 121 XXXXXRMLERNMFLFGAVDLAEGAVTETVXXXXXXXNASIRVAYETLFKNTPINDYIHMD 180
                +ML+ NM +FGAVD  E + T+T+       NA +R AYE L  +T IN +IH+D
Sbjct: 121 AAVAKKMLDENMLIFGAVD--ETSATKTIHQLTELQNARVRFAYEKLICDTSINQFIHLD 178

Query: 181 LGMEVDLNNLKKISSEYAEAKHLAAKEASSILDAENIKRIAGNKELMLGDVFEEIANDWV 240
           +G EVDLN+L K+S EYAEAK  A + A  I++ ++IK I+  KELM G+  E++  +W 
Sbjct: 179 MGKEVDLNSLDKMSIEYAEAKKRAVEGAGEIMEIDDIKHISEEKELM-GERMEKLKEEWD 237

Query: 241 IQKQAFYKQTGL 252
            Q+  FY+QT L
Sbjct: 238 SQRLYFYEQTKL 249


>AT3G53270.1 | Symbols:  | Small nuclear RNA activating complex
           (SNAPc), subunit SNAP43 protein | chr3:19750406-19752168
           REVERSE LENGTH=280
          Length = 280

 Score =  234 bits (598), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 123/252 (48%), Positives = 161/252 (63%), Gaps = 3/252 (1%)

Query: 1   MNIDYFKKDIDELIGQFAQDESTTLADMKRVWLSKKFSYIYEAFPSTNLAFFMQSLYAHS 60
           MN+  FK+DIDELI +F +D+ TT ADMK VWLS+KFS+IYEA P++NLAFFMQSLY H+
Sbjct: 1   MNLSPFKRDIDELIDEFVEDDLTTFADMKSVWLSRKFSHIYEASPNSNLAFFMQSLYVHT 60

Query: 61  IGYMVGAGSLSVRXXXXXXXXXXXETQPFKPPFKIYLSLGELKKVRILXXXXXXXXXXXX 120
           IG+MV   S S R           E QPFKP F+IY+SL EL K R L            
Sbjct: 61  IGHMVSIDSFSRRLGGLYCLYCLHEIQPFKPKFRIYISLQELGKFRDLVVEAKDKGVEIA 120

Query: 121 XXXXXRMLERNMFLFGAVDLAEGAVTETVXXXXXXXNASIRVAYETLFKNTPINDYIHMD 180
                +ML+ NM +FGAVD  E + T+T+       NA +R AYE L  +T IN +IH+D
Sbjct: 121 AAVAKKMLDENMLIFGAVD--ETSATKTIHQLTELQNARVRFAYEKLICDTSINQFIHLD 178

Query: 181 LGMEVDLNNLKKISSEYAEAKHLAAKEASSILDAENIKRIAGNKELMLGDVFEEIANDWV 240
           +G EVDLN+L K+S EYAEAK  A + A  I++ ++IK I+  KELM G+  E++  +W 
Sbjct: 179 MGKEVDLNSLDKMSIEYAEAKKRAVEGAGEIMEIDDIKHISEEKELM-GERMEKLKEEWD 237

Query: 241 IQKQAFYKQTGL 252
            Q+  FY+QT L
Sbjct: 238 SQRLYFYEQTKL 249


>AT3G53270.6 | Symbols:  | Small nuclear RNA activating complex
           (SNAPc), subunit SNAP43 protein | chr3:19750406-19752168
           REVERSE LENGTH=278
          Length = 278

 Score =  229 bits (584), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 122/252 (48%), Positives = 160/252 (63%), Gaps = 5/252 (1%)

Query: 1   MNIDYFKKDIDELIGQFAQDESTTLADMKRVWLSKKFSYIYEAFPSTNLAFFMQSLYAHS 60
           MN+  FK+DIDELI +F +D+ TT ADMK VWLS+KFS+IYEA P++NLAFFMQSLY H+
Sbjct: 1   MNLSPFKRDIDELIDEFVEDDLTTFADMKSVWLSRKFSHIYEASPNSNLAFFMQSLYVHT 60

Query: 61  IGYMVGAGSLSVRXXXXXXXXXXXETQPFKPPFKIYLSLGELKKVRILXXXXXXXXXXXX 120
           IG+MV   S S R           E QPFKP F+IY+SL EL K R L            
Sbjct: 61  IGHMVSIDSFSRRLGGLYCLYCLHEIQPFKPKFRIYISLQELGKFRDLVVEAKDKGVEIA 120

Query: 121 XXXXXRMLERNMFLFGAVDLAEGAVTETVXXXXXXXNASIRVAYETLFKNTPINDYIHMD 180
                +ML+ NM +FGAVD  E + T+T+       NA +R AYE L  +T IN +IH+D
Sbjct: 121 AAVAKKMLDENMLIFGAVD--ETSATKTIHQLTELQNARVRFAYEKLICDTSINQFIHLD 178

Query: 181 LGMEVDLNNLKKISSEYAEAKHLAAKEASSILDAENIKRIAGNKELMLGDVFEEIANDWV 240
           +G EVDLN+L K+S EYAEAK  A +    I++ ++IK I+  KELM G+  E++  +W 
Sbjct: 179 MGKEVDLNSLDKMSIEYAEAKKRAVE--GEIMEIDDIKHISEEKELM-GERMEKLKEEWD 235

Query: 241 IQKQAFYKQTGL 252
            Q+  FY+QT L
Sbjct: 236 SQRLYFYEQTKL 247