Miyakogusa Predicted Gene

Lj4g3v1880950.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1880950.1 tr|F2E072|F2E072_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,57.69,0.000000000000002,seg,NULL,CUFF.49860.1
         (231 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02530.1 | Symbols:  | chloroplast thylakoid lumen protein | ...   150   8e-37

>AT4G02530.1 | Symbols:  | chloroplast thylakoid lumen protein |
           chr4:1112335-1114005 REVERSE LENGTH=216
          Length = 216

 Score =  150 bits (379), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 72/118 (61%), Positives = 88/118 (74%)

Query: 114 QGVISSSTKETGYLQDVVYKLSEVGQAIENNDLSTAGSVFGRGKDTDWVQKANIALNKLS 173
           Q V++S+ KE GYLQD+VYKLS+VGQAIENNDL  AG V G+G DT+WV+  N+A  KLS
Sbjct: 99  QAVLNSAVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFTKLS 158

Query: 174 SSPEEKSEADTFXXXXXXXXXXXXQKDVESSKLAFVSSASAFEKWTSLTGLVAQLKGL 231
           +SPEE +E + F            + D+ESSKLAFVSSA AFEKWT+LTGL+ QLKGL
Sbjct: 159 TSPEENTEVEAFNSSLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQLKGL 216