Miyakogusa Predicted Gene

Lj4g3v1880730.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1880730.2 Non Chatacterized Hit- tr|F6HT74|F6HT74_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,33.01,0.000008,TPR_REGION,Tetratricopeptide repeat-containing
domain; TPR_11,NULL; TPR-like,NULL; no description,Te,CUFF.49825.2
         (293 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G20190.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   165   4e-41
AT1G80130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   149   2e-36
AT4G32340.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   135   3e-32
AT4G17940.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   128   6e-30
AT1G04530.1 | Symbols: TPR4 | Tetratricopeptide repeat (TPR)-lik...    89   3e-18
AT1G07280.3 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    89   3e-18
AT1G07280.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    89   3e-18
AT1G07280.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    89   3e-18
AT2G29670.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    89   4e-18
AT3G47080.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    70   1e-12

>AT5G20190.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:6814093-6815171 FORWARD
           LENGTH=290
          Length = 290

 Score =  165 bits (417), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 69/100 (69%), Positives = 90/100 (90%)

Query: 159 STDLYYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGEVMSMYAD 218
           +TD++YR MIEANPGN +FLSNYA++LKEVR DY+KAEEYCG+AIL +PNDG V++MYA+
Sbjct: 155 NTDVHYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAE 214

Query: 219 LIWESYKDATRAETYYDQAVKASPDDCYVLASYAHFLWDA 258
           L+W+ +KD++RAE Y++QAV A+P+DCYV ASYA FLWDA
Sbjct: 215 LVWKIHKDSSRAENYFNQAVAAAPEDCYVQASYARFLWDA 254


>AT1G80130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:30141250-30142478 REVERSE
           LENGTH=305
          Length = 305

 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/271 (38%), Positives = 142/271 (52%), Gaps = 25/271 (9%)

Query: 1   MLLQSSSTPIMNSFLPH--SKDPSTEPE-HLHRIPRTRSVTLSGSWSPIEGRRS-RMTRA 56
           MLL+S+S PI+NS+LP   S++ S EPE  L R  R+ S++L  S S I+G    ++ +A
Sbjct: 1   MLLRSTSAPILNSWLPQHCSRESSPEPESQLWR--RSTSLSLFSSKS-IDGHTGEQLHQA 57

Query: 57  LSETDLTAAPKRKPPSHGLFDEDEGKASTLAARSRTTSLGPALFSFSEL--------EEG 108
           LS+       K K   H          +  ++R R +SL    ++   L        E  
Sbjct: 58  LSDNKEIIILKSKSNEHSY-------KTPTSSRQRRSSLDETRYTKKTLDRSSPFLVERL 110

Query: 109 VSGIGVRDEGLLASRV---LVEXXXXXXXXXXXXXXXXXXXXXXFWDKNHGSDSTDLYYR 165
            S  G  D+     R+   +                          D     D+TD YYR
Sbjct: 111 FSSSGQGDKASSNDRLETLVSGGGGGMGGSGGNICNGGGGVGGSGVDGGRSEDATDTYYR 170

Query: 166 TMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGEVMSMYADLIWESYK 225
            MI++NPGN L   NYA++LKEV+ D  KAEEYC +AIL N NDG V+S+YADLI  +++
Sbjct: 171 EMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYADLILHNHQ 230

Query: 226 DATRAETYYDQAVKASPDDCYVLASYAHFLW 256
           D  RA +YY QAVK SP+DCYV ASYA FLW
Sbjct: 231 DRQRAHSYYKQAVKMSPEDCYVQASYARFLW 261


>AT4G32340.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:15612741-15614219 REVERSE
           LENGTH=238
          Length = 238

 Score =  135 bits (340), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/101 (62%), Positives = 79/101 (78%), Gaps = 1/101 (0%)

Query: 159 STDLYYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPN-DGEVMSMYA 217
           S D YY  MI+  PG+ L LSNYAR+LKEV+ D  KAEEYC +A+L+    DGE++SMY 
Sbjct: 109 SVDGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLSMYG 168

Query: 218 DLIWESYKDATRAETYYDQAVKASPDDCYVLASYAHFLWDA 258
           DLIW+++ D  RA++YYDQAV++SPDDC VLASYA FLWDA
Sbjct: 169 DLIWKNHGDGVRAQSYYDQAVQSSPDDCNVLASYARFLWDA 209


>AT4G17940.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:9965787-9966778 FORWARD
           LENGTH=274
          Length = 274

 Score =  128 bits (321), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 56/96 (58%), Positives = 69/96 (71%)

Query: 163 YYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGEVMSMYADLIWE 222
           YYR M+ +NP N L L NY ++L EV  D   AEEY G+AIL NP DGE +SMY  LIWE
Sbjct: 153 YYREMLRSNPNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRLIWE 212

Query: 223 SYKDATRAETYYDQAVKASPDDCYVLASYAHFLWDA 258
           + +D  RA+ Y+DQAV ASP+DC VL SYA F+W+A
Sbjct: 213 TKRDEKRAQGYFDQAVNASPNDCMVLGSYARFMWEA 248


>AT1G04530.1 | Symbols: TPR4 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:1234456-1235895 REVERSE
           LENGTH=310
          Length = 310

 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 68/106 (64%), Gaps = 6/106 (5%)

Query: 152 DKNHGSDSTDLYYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGE 211
           DKN G      YY+ M+E  P +PL L NYA++L E + D   AEEY  K  +  P+DG 
Sbjct: 118 DKNCGD-----YYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPSDGV 171

Query: 212 VMSMYADLIWESYKDATRAETYYDQAVKASPDDCYVLASYAHFLWD 257
            ++ Y  L+ + ++D  +A +Y+++AV+ASPDD  VLA+YA FLW+
Sbjct: 172 ALANYGRLVMKLHQDEAKAMSYFERAVQASPDDSIVLAAYASFLWE 217



 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 20/118 (16%)

Query: 163 YYRTMIEANPGNPLFLSNYARYLKEVRL-------------------DYVKAEEYC-GKA 202
           Y+   ++A+P + + L+ YA +L E+                     D  +A+    GK+
Sbjct: 193 YFERAVQASPDDSIVLAAYASFLWEINADDDDEDDDEDDDESSGQGKDEFEADAAGKGKS 252

Query: 203 ILANPNDGEVMSMYADLIWESYKDATRAETYYDQAVKASPDDCYVLASYAHFLWDAEE 260
            L+   DGE +  YA   W    D  +A  Y+++AV+ASP+D  +L  YA FLW+ +E
Sbjct: 253 SLSKTEDGETLCRYAKAFWSINNDHEKALFYFEKAVEASPNDSIILGEYARFLWEIDE 310


>AT1G07280.3 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:2238505-2240991 FORWARD
           LENGTH=552
          Length = 552

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 62/103 (60%)

Query: 160 TDLYYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGEVMSMYADL 219
           T+L Y+T +   PGN L L+NYA++L  +  DY +AE+Y  +A  A P D E ++ YA  
Sbjct: 435 TELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATF 494

Query: 220 IWESYKDATRAETYYDQAVKASPDDCYVLASYAHFLWDAEEDD 262
           +W +  D  RAE  Y +A+ A P +    A+YAHFLW+   D+
Sbjct: 495 LWRARNDIWRAEETYLEAISADPTNSVYSANYAHFLWNTGGDE 537



 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 38/80 (47%)

Query: 182 ARYLKEVRLDYVKAEEYCGKAILANPNDGEVMSMYADLIWESYKDATRAETYYDQAVKAS 241
           AR   E  +DY K E      +   P +  +++ YA  ++    D  RAE Y+ +A KA 
Sbjct: 422 ARLEAEESMDYFKTELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAE 481

Query: 242 PDDCYVLASYAHFLWDAEED 261
           P D   L  YA FLW A  D
Sbjct: 482 PADAEALNKYATFLWRARND 501


>AT1G07280.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:2238505-2240991 FORWARD
           LENGTH=552
          Length = 552

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 62/103 (60%)

Query: 160 TDLYYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGEVMSMYADL 219
           T+L Y+T +   PGN L L+NYA++L  +  DY +AE+Y  +A  A P D E ++ YA  
Sbjct: 435 TELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATF 494

Query: 220 IWESYKDATRAETYYDQAVKASPDDCYVLASYAHFLWDAEEDD 262
           +W +  D  RAE  Y +A+ A P +    A+YAHFLW+   D+
Sbjct: 495 LWRARNDIWRAEETYLEAISADPTNSVYSANYAHFLWNTGGDE 537



 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 38/80 (47%)

Query: 182 ARYLKEVRLDYVKAEEYCGKAILANPNDGEVMSMYADLIWESYKDATRAETYYDQAVKAS 241
           AR   E  +DY K E      +   P +  +++ YA  ++    D  RAE Y+ +A KA 
Sbjct: 422 ARLEAEESMDYFKTELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAE 481

Query: 242 PDDCYVLASYAHFLWDAEED 261
           P D   L  YA FLW A  D
Sbjct: 482 PADAEALNKYATFLWRARND 501


>AT1G07280.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:2238505-2240991 FORWARD
           LENGTH=552
          Length = 552

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 62/103 (60%)

Query: 160 TDLYYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGEVMSMYADL 219
           T+L Y+T +   PGN L L+NYA++L  +  DY +AE+Y  +A  A P D E ++ YA  
Sbjct: 435 TELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATF 494

Query: 220 IWESYKDATRAETYYDQAVKASPDDCYVLASYAHFLWDAEEDD 262
           +W +  D  RAE  Y +A+ A P +    A+YAHFLW+   D+
Sbjct: 495 LWRARNDIWRAEETYLEAISADPTNSVYSANYAHFLWNTGGDE 537



 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 38/80 (47%)

Query: 182 ARYLKEVRLDYVKAEEYCGKAILANPNDGEVMSMYADLIWESYKDATRAETYYDQAVKAS 241
           AR   E  +DY K E      +   P +  +++ YA  ++    D  RAE Y+ +A KA 
Sbjct: 422 ARLEAEESMDYFKTELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAE 481

Query: 242 PDDCYVLASYAHFLWDAEED 261
           P D   L  YA FLW A  D
Sbjct: 482 PADAEALNKYATFLWRARND 501


>AT2G29670.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:12682309-12684745 REVERSE
           LENGTH=536
          Length = 536

 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 65/111 (58%)

Query: 152 DKNHGSDSTDLYYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGE 211
           +++ G   T+L Y+T +   P NPL L+NYA++L  V  D+ +AEEY  +A+   P D E
Sbjct: 412 EEDTGYFKTELMYQTELSQEPNNPLLLANYAQFLYLVSNDHDRAEEYFKRAVGVEPKDAE 471

Query: 212 VMSMYADLIWESYKDATRAETYYDQAVKASPDDCYVLASYAHFLWDAEEDD 262
             S YA  +W +  D   AE  + +A+ A P + Y  A+YA+FLW+   DD
Sbjct: 472 AFSKYATFLWRARDDLWAAEETFLEAIDADPTNSYYAANYANFLWNTGGDD 522


>AT3G47080.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:17338415-17340129 REVERSE
           LENGTH=515
          Length = 515

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 55/98 (56%)

Query: 160 TDLYYRTMIEANPGNPLFLSNYARYLKEVRLDYVKAEEYCGKAILANPNDGEVMSMYADL 219
           T+L Y+  +   P N L L+NYA++L  V  D+ +AE    KAI +   D E  S YA  
Sbjct: 400 TELLYKIGLAQEPDNHLLLANYAQFLYLVTQDHERAENCFKKAIESEDVDAETYSKYAIF 459

Query: 220 IWESYKDATRAETYYDQAVKASPDDCYVLASYAHFLWD 257
           +W+   D   AE  + +A+ A P + +  A+YA+FLW+
Sbjct: 460 LWKVRNDLWAAEENFLEAISADPTNSFYAANYANFLWN 497