Miyakogusa Predicted Gene

Lj4g3v1880730.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1880730.1 tr|B9HAJ3|B9HAJ3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_819088 PE=4
SV=1,46.27,3e-19,seg,NULL,CUFF.49825.1
         (199 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    55   2e-08
AT5G20190.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    55   4e-08

>AT1G80130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:30141250-30142478 REVERSE
           LENGTH=305
          Length = 305

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 90/203 (44%), Gaps = 25/203 (12%)

Query: 1   MLLQSSSTPIMNSFLPH--SKDPSTEPE-HLHRIPRTRSVTLSGSWSPIEGRR-SRMTRA 56
           MLL+S+S PI+NS+LP   S++ S EPE  L R  R+ S++L  S S I+G    ++ +A
Sbjct: 1   MLLRSTSAPILNSWLPQHCSRESSPEPESQLWR--RSTSLSLFSSKS-IDGHTGEQLHQA 57

Query: 57  LSETDLTAAPKRKPPSHGLFDEDEGKASTLAARSRTTSLGPALFSFSELEEG-------- 108
           LS+       K K   H          +  ++R R +SL    ++   L+          
Sbjct: 58  LSDNKEIIILKSKSNEHSY-------KTPTSSRQRRSSLDETRYTKKTLDRSSPFLVERL 110

Query: 109 VSGIGVRDEGLLASRV---LVEXXXXXXXXXXXXXXXXXXXXXXFWDKNHGSDSTDLYYR 165
            S  G  D+     R+   +                          D     D+TD YYR
Sbjct: 111 FSSSGQGDKASSNDRLETLVSGGGGGMGGSGGNICNGGGGVGGSGVDGGRSEDATDTYYR 170

Query: 166 TMIEANPGNPLFLSNYARYLKEV 188
            MI++NPGN L   NYA++LKEV
Sbjct: 171 EMIDSNPGNSLLTGNYAKFLKEV 193


>AT5G20190.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:6814093-6815171 FORWARD
           LENGTH=290
          Length = 290

 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 31/35 (88%)

Query: 159 STDLYYRTMIEANPGNPLFLSNYARYLKEVCEENL 193
           +TD++YR MIEANPGN +FLSNYA++LKEV ++ L
Sbjct: 155 NTDVHYRKMIEANPGNGIFLSNYAKFLKEVRKDYL 189