Miyakogusa Predicted Gene

Lj4g3v1879170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1879170.1 tr|A9RWM8|A9RWM8_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,65.08,7e-18,DnaJ/Hsp40 cysteine-rich domain,Heat shock
protein DnaJ, cysteine-rich domain; no description,Heat s,CUFF.49791.1
         (123 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47650.1 | Symbols:  | DnaJ/Hsp40 cysteine-rich domain superf...   122   6e-29

>AT3G47650.1 | Symbols:  | DnaJ/Hsp40 cysteine-rich domain
           superfamily protein | chr3:17569576-17570262 FORWARD
           LENGTH=136
          Length = 136

 Score =  122 bits (306), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 63/132 (47%), Positives = 85/132 (64%), Gaps = 12/132 (9%)

Query: 1   MAHSLSF---APICSLKSSNR------IVTGNSVARTAFPMKEACQNSKARNFQSLEVKA 51
           MA+SL F    P    +S ++        + N    +    +E  Q S++   QS EVKA
Sbjct: 1   MANSLCFFSSPPTFCFQSPSKNPKPSHFFSTNDNTSSLVQKRELLQTSRS---QSFEVKA 57

Query: 52  TDDKTPSTKARSIVCADCDGNGAILCTQCQGNGVNLVDHFNGRYKAGGLCWLCRGKKDIL 111
            ++    TK  S+VCA+C+G G + C+QC+G GVNL+DHFNG++KAG LCWLCRGKK++L
Sbjct: 58  ANNNPQGTKPNSLVCANCEGEGCVACSQCKGGGVNLIDHFNGQFKAGALCWLCRGKKEVL 117

Query: 112 CGSCNGAGFIGG 123
           CG CNGAGFIGG
Sbjct: 118 CGDCNGAGFIGG 129