Miyakogusa Predicted Gene

Lj4g3v1876870.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1876870.1 Non Chatacterized Hit- tr|I1K1E1|I1K1E1_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,85.42,0,Med17,Mediator complex, subunit
Med17,NODE_11014_length_1970_cov_129.155334.path2.1
         (581 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G20170.1 | Symbols:  | RNA polymerase II transcription mediat...   616   e-176

>AT5G20170.1 | Symbols:  | RNA polymerase II transcription mediators
           | chr5:6807554-6810729 REVERSE LENGTH=653
          Length = 653

 Score =  616 bits (1588), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 324/582 (55%), Positives = 413/582 (70%), Gaps = 17/582 (2%)

Query: 1   MIENLQLAHQELSVIIDLINTVEANDAVTVASMTRPKLLPNEALSDLAVSAATKLQCYRQ 60
           M+ENLQLAHQEL+VIIDLI+TV+ANDAVTVA MTRPK +PNE LSDLAVS ATKLQ YR 
Sbjct: 78  MVENLQLAHQELTVIIDLIDTVQANDAVTVAGMTRPKPMPNEILSDLAVSTATKLQGYRN 137

Query: 61  VGKYFKQSAKAFEQQVAREARFYGALIRLQQNWKVKRQRQPAIGPGNEGFTFDLFDNT-Y 119
           +G YFKQSAKA EQ++ REARFYGALIRLQ+NWKVKRQR  A    NEGFT DL D++ Y
Sbjct: 138 LGNYFKQSAKALEQKINREARFYGALIRLQRNWKVKRQRMLASNASNEGFTIDLSDSSLY 197

Query: 120 DQAAIIRSSLMSTVRVNHDAAGMLAINVSPNSCHSLQFGFVGTQSDDTQGKSNENKSDSE 179
           D  +  R S +ST+RV+HD+AGMLAINV  +S +SL+FG+VG        +S+E+   + 
Sbjct: 198 DPTSGFRPSTLSTIRVDHDSAGMLAINVPQDSWYSLRFGYVGLNPIGNSNESDEHIDSTT 257

Query: 180 HH--LGETGKESLSDEGCVKKTNSLLREVHKAIFNEQVFDLVNREAFNTSTVVSVTGIRE 237
            H   G + K S SD+  VK+T+SLLREVHK+IF EQ+FD++NREAFN     +++G+RE
Sbjct: 258 GHDIPGTSEKLSASDDKYVKETHSLLREVHKSIFAEQLFDMLNREAFNEGVGFNISGLRE 317

Query: 238 NYLQLSLGQRTSVYLSLVSSGQDHTRVEGELTNNVENAILPFESSDGMKHDAKWNTIKKK 297
           N++++S+GQ  S+++SL  SG++ +          E+A L  ESS  ++     +   KK
Sbjct: 318 NFMEMSIGQGASLFVSLHPSGKNPS------IKKSESATLLIESSGRVEPAEGGDYRLKK 371

Query: 298 GQFSNSTCYEIYIQQIYHELIFGRGSEKPTSSGSRLSGAQAKDGSS-LLSHFFMSLAHRI 356
             F N T YEIY+QQI+HE  FG+  ++  S   R S    KD +S LL HF +SL HRI
Sbjct: 372 LGFPNRTSYEIYLQQIFHEHAFGKAKDQLKSKSIRASNQTEKDSNSGLLDHFCLSLTHRI 431

Query: 357 FSTKVLAELENVVCKVPYLQLISNPTWHSRGSSWTLFMEVPRSILRGSQIKTVEYCEKNT 416
           FS +VL  LE+VVCKVPYL LIS+PTW+SR SSWT+FM VP SI+   + +T     K  
Sbjct: 432 FSNRVLVHLESVVCKVPYLHLISHPTWNSRTSSWTVFMTVPPSIIPQGRSETQSPDGKRN 491

Query: 417 IKRQFWTKVVVNDDCIIVKAEGSPNVAGLFKGKSEETHSINKYNCNLADLGVVILQQVAS 476
           +K QF TKVVV DDCI V+AE +PNV GL K  S    SINKY C++ADL V+ILQQVAS
Sbjct: 492 LKTQFRTKVVVKDDCISVEAECTPNVVGLLKSSSCNLFSINKYECDVADLPVMILQQVAS 551

Query: 477 QIMNWLHQEALMVGIKVNRDFLSLSFELEQGETLGLVANVDPEDVEGGISWWLVMEDSFA 536
           QI+ WL +EA  VG K +R+FLSLS E+ +GE + LVA+V+PED +G ISWWLVME+   
Sbjct: 552 QIVCWLLEEARTVGTKASREFLSLSLEIVEGERVSLVAHVNPEDAKGCISWWLVMENGCT 611

Query: 537 EEQKLHINATNGASEYRKFLGHLSLDLLYATLMDFVSLCSGG 578
           EE++       G SE RK LGHLSLD+LY+ LMD ++LC  G
Sbjct: 612 EERE-------GVSESRKLLGHLSLDVLYSVLMDLINLCGTG 646